Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0198 ATGGATCTGATGCTTGACAAGAACAAACAGACAAAGAGTCGGCGGAAGAACCCCGCTGCTGGTCCGCAAGAAGATTGCGATGATGTTCAAAAGAAGCTGATGCGAAGGTACACGGAAAGACAAAGGAGGCAAGAAATGGCCGATCTTTCTGCTTCTCTTAGATCCTTACTCCTTCTAGAGTACATCAAGGGGAAGCGATCGGTATCGGATCATTTGAATGAGGCTGCCAAATACATCAAACATCTACAAAATAGGATCCAGGAACTGAGTGGTAAGAGGAACAGGCTAAGGATTATGTGCAATAATTTGAGTGTTGATGACCCTGATATTACAACCTTAACCAAAGCTACAACAACTCATGACCCACCAACAAATGTTATTACTGTTACTCGAACTTTGGCTGGGATTGAGGGAGTGATCCTGATTCTACTTACCACAATAATGAGCATAGGGAACAAGAAGCATATCACACTGCCTTCTTCTTCCGACAATAGTTATGGTGATCAGGCAAGTGTTCGTGATGATGAGAAAAAGATCGCTCGCAGGGAAACTGAAAGGAAAAGAAGGCAGCAAATGACCACCCTTTGTGAATCACTCCGATCTTTGCTACCTTTTGAGCTCATCAAGGGAAAACGTTCAGTGTCTGATCAAATAGGGGAGGCTGCAAGTTATATCAAAGATTTGCAGGAGAAAACCCAAGAACTCCAAATCAAGAGAGATAAGCTCAAACAAAAGGCTAATCCAAGTTTTCTTGGTGCTGGAATAGATGAAAGTTCTTCAAGCCATTTAAATATGGTTAAGTGTGTGAGCATTTCGCCTTTTCCAGGTGGCCTGGAAATTTCTGTAGACAGTGGCTTGGAGGAAAGCGGCTTTCCACTATCAATCTTGTTGGAAATATTGATGCAAGAAGGATGTAATGTTGTGAGCTGTGTGTCCACCCAAGTGAATGGGAGGCTATACCACTCTATGAAGTCTGAGGTGGAGAACTTTGAAAGCCTTGATATAGCTGGGTTGGAACAGAAACTGAATGCTGCAATCTTCTGGTCAAGTGTGACAAATTCACAACAGTGCTTAGCACTGTGTGTTGATATCTTGTGGGAAAATGCAAATTTGCACTCCTTTCAACTACAAGCAACTTGTGAATACTCTTCTAAGTTATAA 1161 0.4229 MDLMLDKNKQTKSRRKNPAAGPQEDCDDVQKKLMRRYTERQRRQEMADLSASLRSLLLLEYIKGKRSVSDHLNEAAKYIKHLQNRIQELSGKRNRLRIMCNNLSVDDPDITTLTKATTTHDPPTNVITVTRTLAGIEGVILILLTTIMSIGNKKHITLPSSSDNSYGDQASVRDDEKKIARRETERKRRQQMTTLCESLRSLLPFELIKGKRSVSDQIGEAASYIKDLQEKTQELQIKRDKLKQKANPSFLGAGIDESSSSHLNMVKCVSISPFPGGLEISVDSGLEESGFPLSILLEILMQEGCNVVSCVSTQVNGRLYHSMKSEVENFESLDIAGLEQKLNAAIFWSSVTNSQQCLALCVDILWENANLHSFQLQATCEYSSKL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0198 386 Gene3D - 23 107 IPR036638 GO:0046983
Lele45g0198 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 30 101 IPR036638 GO:0046983
Lele45g0198 386 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 17 136 IPR015660 -
Lele45g0198 386 Pfam Helix-loop-helix DNA-binding domain 33 83 IPR011598 GO:0046983
Lele45g0198 386 Pfam Helix-loop-helix DNA-binding domain 177 229 IPR011598 GO:0046983
Lele45g0198 386 CDD bHLH_AtORG2_like 177 244 - -
Lele45g0198 386 Gene3D - 168 249 IPR036638 GO:0046983
Lele45g0198 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 228 IPR011598 GO:0046983
Lele45g0198 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 248 IPR036638 GO:0046983
Lele45g0198 386 SMART finulus 182 234 IPR011598 GO:0046983
Lele45g0198 386 SMART finulus 36 88 IPR011598 GO:0046983
Lele45g0198 386 Coils Coil 225 245 - -
Lele45g0198 386 Coils Coil 72 99 - -
Lele45g0198 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 82 IPR011598 GO:0046983
Lele45g0198 386 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0198 Lele-ChrLele45 1651931 1657363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0198 182 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 39.412 2.56e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele45g0198 HLH 1.2e-07 No_clan