Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0188 ATGGTGAGTCAGAGGCAGCGACTTGCGCGGAAAAAATTCAAAGCTGAGCACCATGAACTGTTCCCAAAGCCTGAGCCGACGCCCCCAAAAGACCCTGACAAGAAGAAGAAGAAGAAACCGAAGAGTTTGCACAAGCGCAAAAAGGGAGAATCGAAAGAACTCGGTGTTAACGATAAACCCTTTAAAAGGAGTTCCAAAAAACACCCACTTAGAGTTCCTGGTATGAAGCCCGGTGAGAGCTGTTTCATCTGCAAAGCTAAAGACCATATTGCTAAGTCCTGTCCCGAAAAAGCTGAGTGGGAAAAGAATAAGACCTGTTTACGTTGTCGGCAGCGCGGTCACAGAGCCAAGAATTGCCCTCAGGTGAAAGATGTGGCCAATGATACGAAAATATGCTATAATTGTGGAGAAACTGGACACTCACTTTCAAAATGTCCACAGCCTCTTCAAGCTGGGGGAACAAAATTCGCTGAGTGCTATGTATGTAATGGCCGTGGGCACTTGAGCAAAAACTGCCCTCAAAATGTCCATGGCATCTATCCAAAGGGTGGTTGCTGTAAGGTATGTGGCGGTGTGACACATTTGGCAAAGGATTGTCCTGAAAAGGGGAAAAAAGAGTCTTCTGCTGCTAATTGGTCTATGAATGCTGGAGGGCCCAGAAATCAGGTGACCAAGCTGGTGAGCGGGGATGATCTTGAGGATGACTTCATGGCTGATGACGTATCTAATGTTGACAAGCCCTCCAAATCCAAATCTAAAAATGTCCATGAAAAACCAAAGAAGAAGGGTCCCAAAGTGAATGCGGCGTCTGGAATGGCTGTGAATGATGAGTGTAAACTCAAGTTCCAAGAGCTGAAAGCAAAGAGAAACCATCGTTTCATTGTGTTCAAGATTGAAGATCAAGAAATTGTAGTGGACAAAGTTGGAAACCCAAATGCTAATTATGAAGATTTCACTTCATCTCTTCCTTCTAACGAGTGTCGTTATGCTATCTTTGATTTTGATTTCATCACTGATGAGAATTACCAGAAAAGCAAGATCTTCTTCTTGGCCTGTTAA 1059 0.441 MVSQRQRLARKKFKAEHHELFPKPEPTPPKDPDKKKKKKPKSLHKRKKGESKELGVNDKPFKRSSKKHPLRVPGMKPGESCFICKAKDHIAKSCPEKAEWEKNKTCLRCRQRGHRAKNCPQVKDVANDTKICYNCGETGHSLSKCPQPLQAGGTKFAECYVCNGRGHLSKNCPQNVHGIYPKGGCCKVCGGVTHLAKDCPEKGKKESSAANWSMNAGGPRNQVTKLVSGDDLEDDFMADDVSNVDKPSKSKSKNVHEKPKKKGPKVNAASGMAVNDECKLKFQELKAKRNHRFIVFKIEDQEIVVDKVGNPNANYEDFTSSLPSNECRYAIFDFDFITDENYQKSKIFFLAC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0188 352 SUPERFAMILY Actin depolymerizing proteins 264 351 - -
Lele45g0188 352 MobiDBLite consensus disorder prediction 1 72 - -
Lele45g0188 352 Pfam Zinc knuckle 131 147 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 Pfam Zinc knuckle 105 121 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 Gene3D - 129 179 - -
Lele45g0188 352 SUPERFAMILY Retrovirus zinc finger-like domains 127 176 IPR036875 GO:0003676|GO:0008270
Lele45g0188 352 MobiDBLite consensus disorder prediction 47 63 - -
Lele45g0188 352 Gene3D Severin 260 352 IPR029006 -
Lele45g0188 352 PANTHER OS04G0555800 PROTEIN 1 267 - -
Lele45g0188 352 Pfam Cofilin/tropomyosin-type actin-binding protein 278 350 IPR002108 GO:0003779
Lele45g0188 352 MobiDBLite consensus disorder prediction 238 268 - -
Lele45g0188 352 ProSiteProfiles Zinc finger CCHC-type profile. 132 147 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 ProSiteProfiles Zinc finger CCHC-type profile. 159 174 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 SUPERFAMILY Retrovirus zinc finger-like domains 74 122 IPR036875 GO:0003676|GO:0008270
Lele45g0188 352 FunFam Zinc finger CCHC-type-containing 9 156 209 - -
Lele45g0188 352 CDD ADF_cofilin_like 270 349 IPR017904 GO:0015629|GO:0030042
Lele45g0188 352 ProSiteProfiles ADF-H domain profile. 271 352 IPR002108 GO:0003779
Lele45g0188 352 SMART adf_2 276 348 IPR002108 GO:0003779
Lele45g0188 352 MobiDBLite consensus disorder prediction 13 33 - -
Lele45g0188 352 Gene3D - 74 128 - -
Lele45g0188 352 ProSiteProfiles Zinc finger CCHC-type profile. 106 121 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 SMART c2hcfinal6 185 201 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 SMART c2hcfinal6 131 147 IPR001878 GO:0003676|GO:0008270
Lele45g0188 352 SMART c2hcfinal6 80 96 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0188 Lele-ChrLele45 1574175 1576978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0188 106 209 C2H2 Transcription Factor Family AT5G20220 28.099 6.31e-07 48.9