Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0179 ATGTCAGATTCCGAGGACGAAAATCCCGAAATTACTCCCCAATCAAAGCCCAACGTAGAGGAACCTGGCTCTGTAATGGATTTCGACCTCGACCTAGAGAGTTCTTGGCCTTTAGATCAGATAGCTTTCACTTCTAACCCGATGTCCCCTTTTCTGATTTCCACCACATCGGAGCAACCTTCTTCTCCTCTCTGGCTTTTCTCAGACGTTGACGATGATAGGCAAGCTAAACTTGCCGCTTCAGCCGTCTCCCATGTCCATCGATTGCTCTCATGCAATTCGAATTCAGTAGCTGAAAAACCAGCGGAGAATGAGGAGACGAAAAAACCCCCTTCGCCCTTTGTTGCCCTGCCTCCATTACCATTAGAAACTCCAGATGGGTATTGTTTGATTAAAGAAAGGATGACGCAAGCTCTAAGGTACTTCAAAGATTTGGCTGACCAGAATGTTCTGGCTCAGGTTTGGGCACCTGTAAGGATGGGGGACCAGTATGTCCTTACAACTTCAGGGCAACCCTTTGTTCTTGATCCACATAGTATTGGACTCTATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCAGCGAATGGAGAGAATGATGGAACCCTGGGGCTTCCCGGTCGTGTTTTTCATCAGAAGTTGCCAGAATGGTCTCCCAATGTCCAATATTACTCTAATAAAGAGTATCCCCGCCGAAATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACTTTCGGGGAAGGCATGTATTGGTGTGCTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAAGAGTTCGGAAATTTTGGAACATCCATTCACTCAGATTTGTAATGAAAGCCGTCAGAATGCATTAGCAGAGATCTTGGAGATATTGACAGTGGTCTGTGAAACTCATAAATTACCTCTGGCCCAAACATGGGTTCCCTGTAGGCATCGGAGTGTTCTGGCCAATGGTGGTGGCCTGAAGAAGTGCTGCTCCAGCTTCGATGGTAGTTGCATTGGGCAAGTTTGCATGTCTACTACTGATGTTGCATTCTATGTCATAGATGCTCATATGTGGGGTTTCCATGAAGCCTGTGCTGAGCACCACCTACAACAAGGTCAAGGGGTTGCTGGGAAGGCATTTTTGTCCGGCAATATGTGCTTCTGTGCGAACATTACCCGGTTCTGCAAAACTGAGTATCCTTTGGTACATTATGCTCTCATGTTTGGCTTAACCAGCTGTTTTGCTGTCTGTTTGCAAAGCTCTCATACAGGACTTGATGATTATATATTGGAGTTTTTTCTGCCTCCTAAAGTCACAGACTTAAATGAACAAAAGACTATGTTGGGATCTATATTAGCAACAATGAAACAGCATTTCCGTAGTCTTAAGATAGCTGCTGGTCTTGAACTCGAGGAGGAATGTTCAGTTGAAATCATTGAGGCAACAAGTGAAAGAGTTTATTCAAGACTTGAATCTATTATGATTACCCAACCTACTAAATTGCCACTGGGATCTGATGCCTTGCCAAATATGGGGGAGATTTTACCACTGGATACATCAGAGCAGCGAATGGTATTTTTAAACGATATAAATGGTGGTCAGGGTCTCGATGATAGAGCTGGTGAAACCTCTGATAAGATATCCCACTTGGAGACTAAAAACACAAAGAAACCCTCAGAGAGAAAACGGGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTTTGCGAAACTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGTCTTGGTGTTTGCCCCACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCCCGGAAGATTAACAAGGTTAATCATTCCCTGTCCAAGCTCAAGCGGGTCATTGAATCCGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGTACCTCTTCAATTCCCATGGCTGTTGGCTCCTTTCCTGAGCCTTCAAACAAGTTCAACCAACAAGCCTCGCTAAGGACTCAACTGGCAGAACCACAGATGAAAGAGAGCGAGTTGGATGCCTCCAAAGTATCAGATTCAAACAGGCAAACTGAGGCAGAACATCAGTTGGTAGGAGGAAGGGTACAAAGTCCTGAGAAAAGTGGGTCCAGTCAGGAGTTTGGTAAATGCCCTAAAGGACCTAGAACGGGCAGTCCCTCAAGCGAAGATAGGGCAAACCCTACTTCTCACTGTTCCTGTCATGGTAGTCCCCCAATCGAAAGTTCACCTCCAAAAGATATATTCATTACAACCAATACTGATCAGTATGTTGTGGCTGGGGGATCGCCCGAGTTGCCGCCAACAAGTAAACTGAATAGTCCGCCTGGGGATGCCATGCCCAACTTTGTGCCCACAGAACTTCAGGAGTCATTTGGAGGAATGCTGATAGAGGATGCAGGTAGTTCCAAAGACTTGAGAAATTTGTGTCCTGCAGCAGCAGATGCCAATGTAGAGGACCAGTTGCCAGAAGCTTGTGCTGCTAATCCTCCAGGCTCTGACTTGGGTCCAAAGCAATGCGCCAATACTCTTGGCTACACGATGACGCCTTTTGCAGCTCGGAGAGAAATGAAGACTGTGACTATAAAAGCAACATACAGAGAAGATATCATACGGTTTCGTATCTCCTTAACCTCTGGCATCGTGGATCTGAAAGAAGAAGTTGCCAAAAGGCTGAAACTGGAGGTGGGTACTTTCGATATCAAGTACCTGGATGATGATCAAGAATGGGTTTTGATAGTCTGTGATGCAGACCTTCAGGAGTGCATGGACATCTCTAGATCATCCGGCACTAACATAATCAGACTTTTGGTACATGATATAACATCCAATCTCGGAAGTTCCTGTGAGAGCTCGGGGCAGTGA 2955 0.4514 MSDSEDENPEITPQSKPNVEEPGSVMDFDLDLESSWPLDQIAFTSNPMSPFLISTTSEQPSSPLWLFSDVDDDRQAKLAASAVSHVHRLLSCNSNSVAEKPAENEETKKPPSPFVALPPLPLETPDGYCLIKERMTQALRYFKDLADQNVLAQVWAPVRMGDQYVLTTSGQPFVLDPHSIGLYQYRTVSLMYMFSANGENDGTLGLPGRVFHQKLPEWSPNVQYYSNKEYPRRNHAQHYNVRGTLALPVFELSGKACIGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILEHPFTQICNESRQNALAEILEILTVVCETHKLPLAQTWVPCRHRSVLANGGGLKKCCSSFDGSCIGQVCMSTTDVAFYVIDAHMWGFHEACAEHHLQQGQGVAGKAFLSGNMCFCANITRFCKTEYPLVHYALMFGLTSCFAVCLQSSHTGLDDYILEFFLPPKVTDLNEQKTMLGSILATMKQHFRSLKIAAGLELEEECSVEIIEATSERVYSRLESIMITQPTKLPLGSDALPNMGEILPLDTSEQRMVFLNDINGGQGLDDRAGETSDKISHLETKNTKKPSERKRGKTEKSISLEVLRNYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNHSLSKLKRVIESVQGAEGAFGLNSLSTSSIPMAVGSFPEPSNKFNQQASLRTQLAEPQMKESELDASKVSDSNRQTEAEHQLVGGRVQSPEKSGSSQEFGKCPKGPRTGSPSSEDRANPTSHCSCHGSPPIESSPPKDIFITTNTDQYVVAGGSPELPPTSKLNSPPGDAMPNFVPTELQESFGGMLIEDAGSSKDLRNLCPAAADANVEDQLPEACAANPPGSDLGPKQCANTLGYTMTPFAARREMKTVTIKATYREDIIRFRISLTSGIVDLKEEVAKRLKLEVGTFDIKYLDDDQEWVLIVCDADLQECMDISRSSGTNIIRLLVHDITSNLGSSCESSGQ 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0179 984 MobiDBLite consensus disorder prediction 700 714 - -
Lele45g0179 984 CDD PB1_NLP 890 970 IPR034891 -
Lele45g0179 984 MobiDBLite consensus disorder prediction 96 115 - -
Lele45g0179 984 MobiDBLite consensus disorder prediction 1 27 - -
Lele45g0179 984 MobiDBLite consensus disorder prediction 693 778 - -
Lele45g0179 984 PANTHER PROTEIN NLP8 57 983 IPR045012 GO:0003700
Lele45g0179 984 SUPERFAMILY CAD & PB1 domains 886 974 - -
Lele45g0179 984 MobiDBLite consensus disorder prediction 750 767 - -
Lele45g0179 984 ProSiteProfiles PB1 domain profile. 889 971 IPR000270 GO:0005515
Lele45g0179 984 MobiDBLite consensus disorder prediction 560 588 - -
Lele45g0179 984 MobiDBLite consensus disorder prediction 557 588 - -
Lele45g0179 984 SMART PB1_new 889 971 IPR000270 GO:0005515
Lele45g0179 984 ProSiteProfiles RWP-RK domain profile. 577 658 IPR003035 -
Lele45g0179 984 FunFam RWP-RK domain-containing protein 886 970 - -
Lele45g0179 984 Gene3D - 886 970 - -
Lele45g0179 984 Pfam RWP-RK domain 590 638 IPR003035 -
Lele45g0179 984 Pfam PB1 domain 889 970 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0179 Lele-ChrLele45 1456527 1460821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0179 265 984 NLP Transcription Factor Family AT4G24020 55.360 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele45g0179 PB1 2.5e-19 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0179 45 1456527 1460821 Lele48g1266 48 17036077 17040383 hybridization