Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0156 ATGGATCCTAATGGTTGTGTGGATGATAAGAGTGAAAGTAGACTGTATATTGGGAACCTTGATCTTAGAATAACAGAGGCTGCTCTTATAAAAATGTTTTCTCCTTATGGGAAGATTGTATCCGAGGATTTCTTATGGCACACTCGTGGCCCAAAGCGTGGGGAGCCACGGGGGTTTGCTTTTATCCAGTATAGCTCGAAAGAGGAAGCAGAATTGGCCAAGGAGAAAATGCATGGGAAGTTAGCCTGTGGCCGGCCACTGGTTGTTCGGCTTGCCAGCGAGAAGTGCCTGTTAGAAACAGCCAATAACTCATCAAAAGCAATGGGAGAAGGGCGCAAGATACACCATACTGGTAATGGCATGGGACAGACAAGTCGGAGTGCAAAAATAGCTGCAATAAAGAACAAATTGAAATTAATAGAGGAGGAGAGCTCTAGGCCAAAGAAACAGAAGCAAAGTGATGATGTATCATAA 474 0.443 MDPNGCVDDKSESRLYIGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFAFIQYSSKEEAELAKEKMHGKLACGRPLVVRLASEKCLLETANNSSKAMGEGRKIHHTGNGMGQTSRSAKIAAIKNKLKLIEEESSRPKKQKQSDDVS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0156 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Lele45g0156 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Lele45g0156 157 SUPERFAMILY RNA-binding domain, RBD 9 120 IPR035979 GO:0003676
Lele45g0156 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 9 144 - -
Lele45g0156 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Lele45g0156 157 MobiDBLite consensus disorder prediction 104 128 - -
Lele45g0156 157 Gene3D - 7 134 IPR012677 -
Lele45g0156 157 CDD RRM_RBM18 14 93 IPR039157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0156 Lele-ChrLele45 1305563 1306759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0156 13 95 Eukaryotic Initiation Factors Gene Family AT1G71770 40.964 1.27e-12 62.8