Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0120 ATGGCAGATCTTGCTAGCTCCGGGAATGCTGACCGTGACTTAGAGCAGATTTGCAAGGATAAAGTTGAAGCAGAAGTGTGGATTGCTGGCCTCAAAGCTCTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGGTGGAGTGATGGGGGTCTCTACCTTGATGTAAATCCACCTCTGACGGTTTGTCTGAAATCAAGTGATAACAGAGACTTGGCATCAAGTAGTCCAAGTGAAAGTTCAGTTAGTGCACTAGATATTAAATCTCCTGATACTTCTGTGAATTCTAATCCTAGTACTGCTTCAAAGTCCTTTCGACTAGTGAAGTCTGTGAATTCTGAAAGATCAGATTCACCTTTAGACCCTTCAAATATGCAAGCAAAAGGATCTGGTTCAGATGCTTTTCGAGTTAGTGTTTCAAGTGCCCCCAGCACATCAAGTCATGGATCTGCACCAGATGACTGTGATGCTCTGGGTGATGTATACATGTGGGGGGAGGTTATCACTGAGAATGTTATGGGAGTTGGTGTAGATAAAATTTTCAATCACTTCAGTCCAAGGATAGATGTGCTTTTGCCCAGGCCACTGGAGTCCAATGTAGTTTTAGACGTACATCATATAGCATGTGGGGTTAAACATGCTGCGCTAGTCACAAGGCAAGGCGAAGTATTTACTTGGGGTGAAGAATCTGGGGGACGTCTAGGCCATGGTGTTGAGAACAATGTGGTTCAACCTTGTCTAGTTGAAGCTTTGGCTTCTACAACTGTTGAGTTTGTTGCTTGCGGGGAGTTTCACACCTGCGCTGTTACAATGGCTGGGGAACTTTATACTTGGGGTGATGGAACTCATAATGCTGGACTTCTTGGTCATGGCACTGACGTAAGTCATTGGATACCAAAACGAATTTCAGGTCTACTTGAGGGACTTCAAGTTGCTTTTGTCACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGGCAACTCTTCACATTTGGTGATGGAACATTTGGTGTCCTGGGCCATGGAGATAGAGAGAATGTTTCATATCCTAGAGAAGTAAAATCATTGTCAGGGTTAAGAACATTAGCTGTTGCGTGTGGAGTGTGGCATACTGCAGCTGTGGTCGAGGTTATTATGACACAATCCAGTGCAAGTGTATCATCTGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGAGTCCCGACTTGTACCAACTTGTGTGCCTTTGCTCATTGATTACAATTTTTATAACATTGCTTGTGGTCACAGTTTGACAGTTGGCCTCACAACATCAGGACGCGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGCAATTCACTGTCTGATGGAAAGCTGCCCTGCTTGGTCGAAGACAAGCTCTCTGAAGAATGTGTTGAAGAAATTGCATGTGGTGCATATCACGTTGCAGTTTTAACATCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCTAATGGGAGGTTGGGTCATGGGGACGTTGAAGATCGAAAAACCCCAACTTTGGTTGAAGCTTTGAAAGATAGACATGTTAAAAATATTGCATGTGGTTCCAACTACACTGCTGCCATATGCCTTCATAAATGGGTTTCGGGTGCTGAGCAGTCTCAGTGCTCTACTTGTAGACAGCCATTTGGTTTCACTAGAAAGAGGCACAACTGTTATAATTGCGGGCTTGTGCATTGCCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCTCTGGCTCCTAATCCTGGAAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGCTAGATAGCAAGGCAGCTAGACAAGGGAAGAAGACTGATACATTCTCTCTGGTTCGCACCTCACAAACCCCTGTGCTGCAACTGAAAGATGTTGCCCTGTCTACTGTTGATCTGAGACGCACAGCTCCAAGGCCAGTTCTGACATCTTCTGGAGTAAGCTCCAGGTCTGTGTCCCCATTTTCTAGAAGACCAAGTCCACCTCGTTCAGCTACGCCTATTCCAACAACGTCAGGACTTTCTGATAGTCTAAAGAAAACCAACGAACTTTTAAATCATGAAGTGATGAAGTTACGAACTCAGGTTGAGAGCCTGAGAAAAAGGTGTGATTTGCAAGAATTAGAGCTTCAAAGGGCAGAAAAGAGAACTCAGGAAGCTATGGCGATGGCTGCTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTTAAAGATCTGGCCGAGAGGCTACCTCCAGGAGCTTATGACGCTGACAGCATCCGGCCAGCTTACCTGCCAAATGGTATCCTCTCTCCTGACTCGAATTGGGAGGGACATACTAGAGCAGAGTCAATCAGTGGATCTAGCCTGGCCTCCTTTGCTCTTGAATCTTCTCTATTCAACAAAAATGAGGTCACAGGAACTCATCCAACCAATCCTTACCAGCAAAACCGGGTGCTCGTGCCTTCCAATGGGACAAATGAATACCCAAATGTTATACATGCGAATGGCAGCGTGTTTCAGGCAACTAACAGTAGCATATTAGATACCGCTGATGGCAGGAATTCTGGACCTCTCCAAGATGGCGAGAGTGGTCCCAGATCAAGGAATGCTGTGCTGGCTGCTAATAGTAATCAAATTGAGGCTGAATGGATTGAACAATATGAACCTGGGGTGTATATAACACTCATGGCTTTAAGCGATGGAACGAGAGATCTAAAACGAGTGCGCTTCAGCCGACGAAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCTGAGAATCGTGAGAAGGTATATGAAAAGTACAATGTCCGTAGTAGTACTGAGAAGTCTTCGAGCCAAGCGGCTCGTGGGGCAGAAGGTGCAGTTTCACCTGTTTCATAA 2952 0.4499 MADLASSGNADRDLEQICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDVNPPLTVCLKSSDNRDLASSSPSESSVSALDIKSPDTSVNSNPSTASKSFRLVKSVNSERSDSPLDPSNMQAKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYMWGEVITENVMGVGVDKIFNHFSPRIDVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVENNVVQPCLVEALASTTVEFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGLLEGLQVAFVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVKSLSGLRTLAVACGVWHTAAVVEVIMTQSSASVSSGKLFTWGDGDKNRLGHGDKESRLVPTCVPLLIDYNFYNIACGHSLTVGLTTSGRVFTMGSTVYGQLGNSLSDGKLPCLVEDKLSEECVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKNIACGSNYTAAICLHKWVSGAEQSQCSTCRQPFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKLDSKAARQGKKTDTFSLVRTSQTPVLQLKDVALSTVDLRRTAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSDSLKKTNELLNHEVMKLRTQVESLRKRCDLQELELQRAEKRTQEAMAMAAEESAKSKAAKEVIKSLTAQLKDLAERLPPGAYDADSIRPAYLPNGILSPDSNWEGHTRAESISGSSLASFALESSLFNKNEVTGTHPTNPYQQNRVLVPSNGTNEYPNVIHANGSVFQATNSSILDTADGRNSGPLQDGESGPRSRNAVLAANSNQIEAEWIEQYEPGVYITLMALSDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVRSSTEKSSSQAARGAEGAVSPVS 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0120 983 MobiDBLite consensus disorder prediction 960 983 - -
Lele45g0120 983 SMART fyve_4 546 615 IPR000306 GO:0046872
Lele45g0120 983 Pfam FYVE zinc finger 548 614 IPR000306 GO:0046872
Lele45g0120 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 444 495 IPR000408 -
Lele45g0120 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 160 221 IPR000408 -
Lele45g0120 983 SUPERFAMILY FYVE/PHD zinc finger 548 618 IPR011011 -
Lele45g0120 983 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 766 - -
Lele45g0120 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 274 328 IPR000408 -
Lele45g0120 983 PRINTS Chromosome condensation regulator RCC1 signature 331 345 IPR000408 -
Lele45g0120 983 PRINTS Chromosome condensation regulator RCC1 signature 433 451 IPR000408 -
Lele45g0120 983 PRINTS Chromosome condensation regulator RCC1 signature 224 240 IPR000408 -
Lele45g0120 983 PRINTS Chromosome condensation regulator RCC1 signature 491 512 IPR000408 -
Lele45g0120 983 PRINTS Chromosome condensation regulator RCC1 signature 315 331 IPR000408 -
Lele45g0120 983 PRINTS Chromosome condensation regulator RCC1 signature 274 290 IPR000408 -
Lele45g0120 983 ProSiteProfiles BRX domain profile. 904 959 IPR013591 -
Lele45g0120 983 MobiDBLite consensus disorder prediction 661 679 - -
Lele45g0120 983 Gene3D - 102 384 IPR009091 -
Lele45g0120 983 Gene3D - 385 561 IPR009091 -
Lele45g0120 983 FunFam PH, RCC1 and FYVE domains-containing protein 1 131 381 - -
Lele45g0120 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 380 IPR000408 -
Lele45g0120 983 MobiDBLite consensus disorder prediction 870 891 - -
Lele45g0120 983 MobiDBLite consensus disorder prediction 68 153 - -
Lele45g0120 983 Pfam Transcription factor BRX N-terminal domain 746 779 IPR027988 -
Lele45g0120 983 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 367 377 IPR000408 -
Lele45g0120 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 562 620 IPR013083 -
Lele45g0120 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 222 273 IPR000408 -
Lele45g0120 983 CDD FYVE_like_SF 557 610 - -
Lele45g0120 983 Pfam Transcription factor regulating root and shoot growth via Pin3 903 958 IPR013591 -
Lele45g0120 983 SUPERFAMILY RCC1/BLIP-II 159 549 IPR009091 -
Lele45g0120 983 MobiDBLite consensus disorder prediction 661 697 - -
Lele45g0120 983 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 208 218 IPR000408 -
Lele45g0120 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Lele45g0120 983 Coils Coil 695 771 - -
Lele45g0120 983 MobiDBLite consensus disorder prediction 68 152 - -
Lele45g0120 983 Pfam Regulator of chromosome condensation (RCC1) repeat 391 438 IPR000408 -
Lele45g0120 983 Pfam Regulator of chromosome condensation (RCC1) repeat 274 325 IPR000408 -
Lele45g0120 983 Pfam Regulator of chromosome condensation (RCC1) repeat 222 270 IPR000408 -
Lele45g0120 983 Pfam Regulator of chromosome condensation (RCC1) repeat 443 492 IPR000408 -
Lele45g0120 983 Pfam Regulator of chromosome condensation (RCC1) repeat 329 377 IPR000408 -
Lele45g0120 983 Pfam Regulator of chromosome condensation (RCC1) repeat 497 544 IPR000408 -
Lele45g0120 983 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 315 325 IPR000408 -
Lele45g0120 983 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 552 614 IPR017455 -
Lele45g0120 983 FunFam PH, RCC1 and FYVE domains-containing protein 1 382 553 - -
Lele45g0120 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 496 547 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0120 Lele-ChrLele45 1122285 1127534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0120 905 973 Major Intrinsic Protein MIP AT1G31880 47.826 4.04e-14 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0120 45 1122285 1127534 Lele47g1177 47 17236316 17241588 hybridization
Lele45g0120 45 1122285 1127534 Lele48g1313 48 17354405 17359426 hybridization