Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0110 ATGCAGCTGGGAGATCCGAGTGTGTTAGAGACCCCCTCCGGCGAGCCCACCACGATGGCGACTGCGCCACCAGAAGAAGCCGCAGCTTCCGTCCACGGCGGTGGGGAAGAAATCAAGATGATGGATAGTATTGTTGACTTGGATGCAACAAATTTAGGTGATGATATTGATCAGAAGAGAAGTAGTGGTGGTGGTGGCGGAGGAGGAGGAGGAGGGAACCGGTGGCCACGCCAGGAAACTTTTGCTCTCTTGAAGATAAGGTCAGATATGGGCGCTGCGTTTCGGGATTCCAGTCTTAAAGGTCCACTTTGGGAACAAGTTTCAAGGAAAATGGCAGAACTTGGATATAATCGAAGCGCAAAGAAGTGCAAGGAGAAGTTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAAGCAGAAGTGGTAAATCAGAAGGTAAAACCTACAAATTCTTTGATCAATTACAAGCCCTTGAAAATAAATTCACTCTCTCTCATAATCACACTCCTCCGTCAAAACCACCACCTCCTCCGCCACAGCCACAACCTCAACCTTCTTTCCGAACATGGCCCTGCAATATTAATAATGATCCTACCACAACTACCATCTCTTACGTCACTACTATGCCATCCACTATAAACCCTACTCTCATTTCTCCTCCTCCGCCGCCACCGGCGAATGTTGTTGCTGCCACCATCGCCGACCCTAGGAATTTGTCAAACAAGAGTCTTTTCTCGTCTATCACGACCACCTCGACCTCATCGTCTACTGCTTCCGATGAGGACATGAAAGAGAAGTATAGGAAGAAGAGAAAGATGAAGGACTACTTCCGGAGGCTGACGAGACAGGTGCTGGCCAAGCAGGAGGAGATGCAGAAGAGGTTTCTAGAAGCCATAGAGAAGAGAGAGCGTCAAAGAGAAGCACAGTTAGAAGCTTGGAGAGCTCAAGAAATGGCCAGGATCAATAGAGAGCATGACATTCTAGTCCAAGAAACATCCACCGCGGCCGCCAAGGACGCTGCCGTCATTACTTTCCTCCAGAAGTTATCCGGCGGCCAGCAAAATCCTGCACCCCCTCCGGCTCCACCGCAACCCGTAATGCAAGTAGAACCTCGTGAACAACTGCAATTGCTGCCTATTGACAACAAGTTTGAAATGCAGAAAGGGATGAACTTAAACAACGGCCATAACAATCCAGTGAGTGTCTCTAATTCTTCTTCTTCTTCTTCAAGGTGGCCAAAGGCAGAAGTTCATGCACTGATAAGGCTAAGGACGAGCATGGACCCAAAGTATCAAGAGAACGGACCGAAAGGGCCGCTATGGGAGGACATATCGGCCGGAATGCAGAGGCTAGGGTACAATCGGAGAGCCAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAACAAGCAAAGGCGTGGGGACAGCAAGACTTGTCCTTACTTTCATGAGCTCGATGCTCTTTACAAAGAGAAGAGCAAGACCGTCTTCGGTGGTGCCTGCGGAAATCCGAATCACGAAATGATGATGGAGCCGTTGATGGTGCAGCCGGAGCAGCAATGGAGGCCGCCTCCGCCACATGCGGATGAGGAGGAGGGTGGGGCGGCGAGGGAGATTAATGCAAATGATATCTTTGAGTTCGAAGCGAAAGAAAGGGAGAGAGAGGGAGAAGAAGAGGAGGAGATGGAAGAAGAATACGATGATAATGTTGAGGAAGATGATCATCATGAAGAAGGATGTTATGAAGTTGCAGCGACAAATAATAAACTTCCTTCAGTGGATACTGTTGAATGA 1824 0.4863 MQLGDPSVLETPSGEPTTMATAPPEEAAASVHGGGEEIKMMDSIVDLDATNLGDDIDQKRSSGGGGGGGGGGNRWPRQETFALLKIRSDMGAAFRDSSLKGPLWEQVSRKMAELGYNRSAKKCKEKFENVYKYHKRTKESRSGKSEGKTYKFFDQLQALENKFTLSHNHTPPSKPPPPPPQPQPQPSFRTWPCNINNDPTTTTISYVTTMPSTINPTLISPPPPPPANVVAATIADPRNLSNKSLFSSITTTSTSSSTASDEDMKEKYRKKRKMKDYFRRLTRQVLAKQEEMQKRFLEAIEKRERQREAQLEAWRAQEMARINREHDILVQETSTAAAKDAAVITFLQKLSGGQQNPAPPPAPPQPVMQVEPREQLQLLPIDNKFEMQKGMNLNNGHNNPVSVSNSSSSSSRWPKAEVHALIRLRTSMDPKYQENGPKGPLWEDISAGMQRLGYNRRAKRCKEKWENINKYFKKVKESNKQRRGDSKTCPYFHELDALYKEKSKTVFGGACGNPNHEMMMEPLMVQPEQQWRPPPPHADEEEGGAAREINANDIFEFEAKEREREGEEEEEMEEEYDDNVEEDDHHEEGCYEVAATNNKLPSVDTVE 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0110 607 MobiDBLite consensus disorder prediction 170 187 - -
Lele45g0110 607 Gene3D - 75 136 - -
Lele45g0110 607 Gene3D - 413 474 - -
Lele45g0110 607 CDD GT1 412 476 - -
Lele45g0110 607 FunFam Trihelix transcription factor GT-2 413 474 - -
Lele45g0110 607 Pfam Myb/SANT-like DNA-binding domain 411 498 IPR044822 -
Lele45g0110 607 Pfam Myb/SANT-like DNA-binding domain 73 159 IPR044822 -
Lele45g0110 607 MobiDBLite consensus disorder prediction 534 562 - -
Lele45g0110 607 PANTHER FI21293P1 32 539 - -
Lele45g0110 607 Coils Coil 297 317 - -
Lele45g0110 607 MobiDBLite consensus disorder prediction 165 194 - -
Lele45g0110 607 CDD GT1 73 138 - -
Lele45g0110 607 ProSiteProfiles Myb-like domain profile. 405 469 IPR001005 -
Lele45g0110 607 MobiDBLite consensus disorder prediction 563 585 - -
Lele45g0110 607 MobiDBLite consensus disorder prediction 528 607 - -
Lele45g0110 607 ProSiteProfiles Myb-like domain profile. 73 131 IPR001005 -
Lele45g0110 607 SMART sant 71 133 IPR001005 -
Lele45g0110 607 SMART sant 409 471 IPR001005 -
Lele45g0110 607 MobiDBLite consensus disorder prediction 394 414 - -
Lele45g0110 607 MobiDBLite consensus disorder prediction 1 78 - -
Lele45g0110 607 Coils Coil 562 582 - -
Lele45g0110 607 FunFam Trihelix transcription factor GT-2 75 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0110 Lele-ChrLele45 1011883 1014405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0110 69 531 Trihelix Transcription Factor Family AT1G76880 51.600 3.80e-142 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele45g0110 Myb_DNA-bind_4 1.2e-21 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0110 45 1011883 1014405 Lele47g1190 47 17373386 17376699 hybridization
Lele45g0110 45 1011883 1014405 Lele48g1326 48 17469528 17477688 hybridization