Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0109 ATGCCGGGGGACTCAACTGCGTTAGGAGGTGGCGGAGCTAGCTCTGGAGATGATGCGGCGGCGGCGGCTGCTGCATCTGCGGGAGGAGTTGCAGAACCGCGTGACTGTGGTGAGTCAGCAGTTGCGGCGGCCGGTAGCGGCGGTGGAGGAGCTGGATCGAATTCAGGCGAAGAGGGTGGTGGTGGAGACAGAAGCTTCGGCGGCAACCGGTGGCCCCGCCAGGAGACTCTGGCGCTCTTGAAGATACGCTCCGACATGGACGTTGAGTTTCGAGACGCCAGCGTGAAGGGTCCCTTGTGGGATGAAGTTTCCAGGAAGCTAGCAGAACTTGGATACCAGAGAAGCGCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTTACAAGTACCACAAGCGAACCAAAGAAGGCCGAACCGGAAAACCATACGGCAAAACGTACCGTTTCTTTGATCAGTTAGAAGCTCTCCATCACCATCATCAAAACCAAAACCAAGACCAACCTCATAATGCTAATTCTTTATTGATTCAATCCGCTTCTTCTAATTCTGCTCCTCTACCTGCACCACCAGTCTCCTTCATACCCACCACCCAACCTCCTCCGTCAGTCATGGTGGCGCCACAAGTAACGCCTCCTCCTCCTCCTCATGTTAATGCTTCTACTACTACTGTTCCATCAATGAACACTACATCAATCCCTCCATTGTACCCACCACCTCCAGCACCAGCAGCCGCAACGACGATAACAGCAAACCCTACTTTTTTACCCTCGTTCGCGAGCATACCGACGGATCTCTTGTCGAATTCTAGTTCGTCTTCGACATCGTCGGATGAGACGATAGATGCTCAGCGGAGGCGGAGGCGCAAGTGGAAGGACTTCTTCGAGAGGTTGATGAAGGAGGTGATAGAGAAGCAGGAGGAGTTGCAGAAGAGGTTTCTGGAAGCCATAGAGAAACGCGAGCACGAGAGAATGGTTCGAGAGGAATCATGGAGAATGCAGGAGATGGCCAGGATCAATAAGGAGAGAGAAATATTGGCGCAGGAAAGATCCATTGCGGCCGCCAAAGACGCTGCTGTAATGGCCTTCTTGCAGAAGATCGCTGAACAGCAGAATCTCGGCCAACAGGCCGCACCGACGACAAATAACATTAGCATCCCCATTCCTCCGACGTCGCAGCCCACGGCAGCTCCCGCTCTAGCACCTCCGCCGTTGCAGCCACTGCAACATGTGACGGTGCAACAATCAACTTCAATTCTTTCTACTCCACCACCGGCTCCGCCTCCACCAACGCAACAAGGTATAACGAGCATGGAAATTGTAGCGAAGACTGACAACGGGGATAACAGTAATTTGACGACCCCGGGTACCTCTTCGTCGAGGTGGCCGAAAGTGGAAGTAGAGACGCTGATAAAACTACGGACAAACATGGACGCCAAGTACGAGGAGAATGGGCCGAAGGGGCCGTTGTGGGAGGAAATCTCCGCCGCAATGAGGAGACTGGGGTACAACCGTAGCTCCAAGAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAGAAGACCAGAAGATTCCAAGACGTGCCCGTACTTTCACCAGTTGGATGCTCTATACAGGGAGAAGAGTTTCAAGCTGCAGTCAGCGCAGCCGCCGCCGCCGGAGAACATGATGTCCACGCCGCTTATGGTGCGCCCAGAGCAGCAGTGGCCGCCGCAGCCGCAGCAAGGAACACGGCCACCGTCAGGGCCGCAAGTGATGACGGGAAGCGCAGGAAATGATGCGATGGAACAAGACGAAGAAGAGGAAGACAAGGATAGAGAAGAAGAAGAAGATGAGGACGATGATGATGGAGGAAGTGGTACCTACGAGATAGTGGCAAGCACGCCAGCTACTTCAGTGGGTGCTTCAGAGTGA 1938 0.5372 MPGDSTALGGGGASSGDDAAAAAAASAGGVAEPRDCGESAVAAAGSGGGGAGSNSGEEGGGGDRSFGGNRWPRQETLALLKIRSDMDVEFRDASVKGPLWDEVSRKLAELGYQRSAKKCKEKFENVYKYHKRTKEGRTGKPYGKTYRFFDQLEALHHHHQNQNQDQPHNANSLLIQSASSNSAPLPAPPVSFIPTTQPPPSVMVAPQVTPPPPPHVNASTTTVPSMNTTSIPPLYPPPPAPAAATTITANPTFLPSFASIPTDLLSNSSSSSTSSDETIDAQRRRRRKWKDFFERLMKEVIEKQEELQKRFLEAIEKREHERMVREESWRMQEMARINKEREILAQERSIAAAKDAAVMAFLQKIAEQQNLGQQAAPTTNNISIPIPPTSQPTAAPALAPPPLQPLQHVTVQQSTSILSTPPPAPPPPTQQGITSMEIVAKTDNGDNSNLTTPGTSSSRWPKVEVETLIKLRTNMDAKYEENGPKGPLWEEISAAMRRLGYNRSSKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKSFKLQSAQPPPPENMMSTPLMVRPEQQWPPQPQQGTRPPSGPQVMTGSAGNDAMEQDEEEEDKDREEEEDEDDDDGGSGTYEIVASTPATSVGASE 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0109 645 MobiDBLite consensus disorder prediction 412 432 - -
Lele45g0109 645 MobiDBLite consensus disorder prediction 552 645 - -
Lele45g0109 645 FunFam Trihelix transcription factor GT-2 71 132 - -
Lele45g0109 645 Gene3D - 71 132 - -
Lele45g0109 645 Gene3D - 460 521 - -
Lele45g0109 645 ProSiteProfiles Myb-like domain profile. 69 127 IPR001005 -
Lele45g0109 645 CDD GT1 458 523 - -
Lele45g0109 645 Coils Coil 290 317 - -
Lele45g0109 645 Pfam Myb/SANT-like DNA-binding domain 458 545 IPR044822 -
Lele45g0109 645 Pfam Myb/SANT-like DNA-binding domain 69 155 IPR044822 -
Lele45g0109 645 CDD GT1 69 134 - -
Lele45g0109 645 Coils Coil 600 620 - -
Lele45g0109 645 PANTHER FI21293P1 40 601 - -
Lele45g0109 645 SMART sant 67 129 IPR001005 -
Lele45g0109 645 SMART sant 456 518 IPR001005 -
Lele45g0109 645 FunFam Trihelix transcription factor GT-2 460 521 - -
Lele45g0109 645 ProSiteProfiles Myb-like domain profile. 452 516 IPR001005 -
Lele45g0109 645 MobiDBLite consensus disorder prediction 264 284 - -
Lele45g0109 645 MobiDBLite consensus disorder prediction 1 70 - -
Lele45g0109 645 MobiDBLite consensus disorder prediction 602 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0109 Lele-ChrLele45 1001042 1003793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0109 63 577 Trihelix Transcription Factor Family AT1G76880 55.064 2.33e-169 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele45g0109 Myb_DNA-bind_4 4.3e-22 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g0109 45 1001042 1003793 Lele45g0109 45 1001042 1003793 ECH
Lele45g0109 45 1001042 1003793 Lele47g1197 47 17432943 17433614 hybridization