Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele45g0062 | ATGGCGGCGTCGATTTCTACACCGATGGTTCAATCCAATGGTCCTCCGGCGCCAGTGTCACCTGTGTCGGCGGCATTGTTTGCCGGGCAATTCGCGAATATGTCATTGTACGTTGGTGATCTTGACTCGAATGTGAATGAAGGGCAGCTCTATGATCTGTTCAACCAAGTGGCGAATGTTGTCTCCATTAGGGTTTGCAGGGATCAGACACGGCGATCCTCTCTCGGTTACGCCTATGTCAACTACGGCACCGCCCAAGATGCGGCTAATGCCATGGAACTTCTCAATTTTACCCCACTTAACGGGAAGCCGATTCGTATCATGTTCTCTCAAAGAGATCCTAGTATTCGGAAAAGTGGATATGCTAATGTGTTCATTAAGAACCTGGACACATCAATAGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGAACTGTACTTTCCTGCAAGGTAGCTGTTGACAGCTCTGGACAGTCAAGAGGGTACGGTTTTGTGCAGTTTGACAATGAAGAAGCTGCGCAAAATGCCATCAAACAGTTGAATGGTATGTTGATAAATGACAAACAAGTCTATGTTGGACTCTTTGTCCGGCGCCAGGAAAGGGCCCGTGCGAACGGATCGCCAAAGTTTACTAATGTTTATGTGAAGAATTTCTCTGAAACATATACTGATGAGGACCTCAAACAGCTTTTTGGGCCATATGGGGCAATAACTAGTGCTGTTGTCATGAAAGATGCAAATGGGAAGTCTCGATGTTTCGGCTTTGTTAATTTCCAAAGCCCGGAATCAGCAGCTGCTGCAGTTGAGAGGTTAAATGGAACCACTATCAATGATGATAAGGTATTATATGTAGGGAGAGCTCAGAAGAAAGCAGAAAGAGAGGCAGAGTTGAAGACCAAATTTGAGCAGGAAAGGATTAGTCGATATGAGAAATTACAAGGTGCTAATTTATACTTGAAAAATCTTGACGATAGCATCAATGATGACAAACTGAAGGAGCTGTTTTCTGAGTTTGGAACTATTACATCATGCAAGGTTATGCTTGATTCACAGGGGCATAGCAAGGGTTCTGGTTTTGTGGCTTTTTCTACGCCTGAGGAAGCAAGTAAAGCCTTGAACGAAATGAATGGGAAAATGGTAGGTCGAAAACCTCTTTATGTTGCTGTGGCCCAACGGAAGGAAGAGAGGAAGGCCCTGCAGGCTCATTTTGCTCAAATCCATGCTCCTGGTAGAATTGCACCTTTGCCTACTGGAATTCCTGGATATCATCCTGGGGCACCTAGACTTGCCCCCCAGCAGTTGTACTATGGTCAGGGAACACCTGGTATGATGCCACCTCAGCCAGCCGGATTTGGTTTCCAGCAACAGCTCTTGACTGGAATGCGTCCTAGTGTTGCTCCAAATTTTATTATGCCATACCAGCTTCAGAGACAGGTTCCACCTGGGCAAAGGATGGGTGTTAGACGGGGTGGAAATTTTCAACATGTGCAGCAGAACCAGATGATGCATCGGAGCTCCAATCAAGGGTTCAGATATATGGGCAACACTCGAAATGGCATGGACCCATCTATTGGTCCCCAAGGCCTAGCAAGTCCGATGATGCCATTGCCCTTTGATGGTTCTGGGGTTACTTCAGCTCCCGTTGATAATCTGCAACCTGGTGCACTTTCTACAACGCTTGCCTCAGCTTTGGCCTCTGCTACACCAGAAAATCAGCGCATGATGTTGGGTGAACATCTATATCCTCTCGTAGAGCGTCTTGCACCAAACCATACAGCAAAAGTGACAGGAATGTTGTTGGAAATGGACCAATCTGAGGTTATCCATCTCATTGAATCTCCTGAAGACCTGAAAATAAAGGTGTCTGAGGCAATGCAAGTCCTGCATGAAGCTGCATCGGGCACTGAAGTTGGAGAGCAGCTCGGCTCGCTGTCACTGAATGAATGA | 1953 | 0.4634 | MAASISTPMVQSNGPPAPVSPVSAALFAGQFANMSLYVGDLDSNVNEGQLYDLFNQVANVVSIRVCRDQTRRSSLGYAYVNYGTAQDAANAMELLNFTPLNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGTVLSCKVAVDSSGQSRGYGFVQFDNEEAAQNAIKQLNGMLINDKQVYVGLFVRRQERARANGSPKFTNVYVKNFSETYTDEDLKQLFGPYGAITSAVVMKDANGKSRCFGFVNFQSPESAAAAVERLNGTTINDDKVLYVGRAQKKAEREAELKTKFEQERISRYEKLQGANLYLKNLDDSINDDKLKELFSEFGTITSCKVMLDSQGHSKGSGFVAFSTPEEASKALNEMNGKMVGRKPLYVAVAQRKEERKALQAHFAQIHAPGRIAPLPTGIPGYHPGAPRLAPQQLYYGQGTPGMMPPQPAGFGFQQQLLTGMRPSVAPNFIMPYQLQRQVPPGQRMGVRRGGNFQHVQQNQMMHRSSNQGFRYMGNTRNGMDPSIGPQGLASPMMPLPFDGSGVTSAPVDNLQPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAASGTEVGEQLGSLSLNE | 650 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele45g0062 | 650 | FunFam | Polyadenylate-binding protein | 203 | 299 | - | - | |
Lele45g0062 | 650 | SMART | rrm1_1 | 318 | 390 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | SMART | rrm1_1 | 123 | 195 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | SMART | rrm1_1 | 214 | 287 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | SMART | rrm1_1 | 35 | 108 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | Gene3D | - | 557 | 635 | - | - | |
Lele45g0062 | 650 | SUPERFAMILY | PABC (PABP) domain | 500 | 634 | IPR036053 | GO:0003723 | |
Lele45g0062 | 650 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 122 | 199 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | Pfam | Poly-adenylate binding protein, unique domain | 566 | 630 | IPR002004 | GO:0003723 | |
Lele45g0062 | 650 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 35 | 630 | IPR006515 | GO:0003723 | |
Lele45g0062 | 650 | FunFam | Polyadenylate-binding protein | 27 | 122 | - | - | |
Lele45g0062 | 650 | Gene3D | - | 123 | 196 | IPR012677 | - | |
Lele45g0062 | 650 | FunFam | Polyadenylate-binding protein | 554 | 636 | - | - | |
Lele45g0062 | 650 | Gene3D | - | 198 | 302 | IPR012677 | - | |
Lele45g0062 | 650 | Gene3D | - | 303 | 407 | IPR012677 | - | |
Lele45g0062 | 650 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 215 | 282 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 36 | 106 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 319 | 387 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 124 | 192 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 398 | IPR035979 | GO:0003676 | |
Lele45g0062 | 650 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 34 | 112 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | SUPERFAMILY | RNA-binding domain, RBD | 35 | 202 | IPR035979 | GO:0003676 | |
Lele45g0062 | 650 | FunFam | Polyadenylate-binding protein | 123 | 196 | - | - | |
Lele45g0062 | 650 | CDD | RRM3_I_PABPs | 212 | 292 | - | - | |
Lele45g0062 | 650 | CDD | RRM4_I_PABPs | 316 | 394 | - | - | |
Lele45g0062 | 650 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 558 | 635 | IPR002004 | GO:0003723 | |
Lele45g0062 | 650 | Gene3D | - | 30 | 122 | IPR012677 | - | |
Lele45g0062 | 650 | CDD | RRM2_I_PABPs | 120 | 195 | IPR045305 | - | |
Lele45g0062 | 650 | CDD | RRM1_I_PABPs | 35 | 114 | - | - | |
Lele45g0062 | 650 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 394 | IPR000504 | GO:0003723 | |
Lele45g0062 | 650 | FunFam | Polyadenylate-binding protein | 300 | 404 | - | - | |
Lele45g0062 | 650 | SMART | rrm2_1 | 318 | 390 | IPR003954 | GO:0003676 | |
Lele45g0062 | 650 | SMART | rrm2_1 | 35 | 108 | IPR003954 | GO:0003676 | |
Lele45g0062 | 650 | SMART | rrm2_1 | 214 | 286 | IPR003954 | GO:0003676 | |
Lele45g0062 | 650 | SMART | rrm2_1 | 123 | 195 | IPR003954 | GO:0003676 | |
Lele45g0062 | 650 | PANTHER | RNA BINDING PROTEIN | 33 | 96 | - | - | |
Lele45g0062 | 650 | SMART | poly_2 | 570 | 633 | IPR002004 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele45g0062 | Lele-ChrLele45 | 669666 | 672641 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele45g0062 | 33 | 639 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 59.839 | 0.0 | 717 |