Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0014 ATGTTTGAACGTGGGCTGGAGGACTTTATGCGGGGCCACTTGGATGATTGCATGTCCTTTGCTTCGTGTAGTTCTGCCCGAACTCAGGATGGGGAGGATGATGAAGGTGATCAGCTAGTTAGGAGGAGAAGAAGATCTGATCTTGAGGGGGATGATTTAGCAGAGTCATCTGCTGCACGCCGCCGCCACTCACGGATTTTGAGCAGATGGGCTGCCCACCAGGCCCAAGAGATGATAACCACAATTGAGAGGAGGAATCGGGAGTCTGAGTTGATGGCACTTGCAGGACTACACACAGTCTCAATGTTGGACTCCTCTTTTTTGAGGGGATCACAGACTCCACCTTCTGGCCAGGAGGGCGCCGTTGAGAGGCCCAGCACTCAGGCTTCTGCCATTCTTCAGATGTGGCGTGAATTGGAGGATGAACACTCACTTAATCGGGCACGTGGAAGAATGAGGGAAAGGTTGCGTCAACAAAGGGTTGCTGACTCTAATGCCAATGGATCAAGTACCTTGTCAGATAGTCGGGGGAGTGAGAACCAGGGGAGTTTGGTGGATGCAAGTGAAAGTGAAAATGATTATGGGACCTGGTCACATGATCAGATTCAATCACAGCATGAAAATGGTGACCGTAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGTGAAGTTGAGAGGGAGAGAGTTCGACAGATTGTGCGGGGATGGATGGAAAGTGGCATCAGTGATCATTCATGTAATGCAAGTCAGAGAAACAATAATTGCAGAGCAGAGTGGCTTGGTGAAACAGAGCGTGAAAGAGTAAGAATTGTCAGGGAGTGGTTGCAAATGACAAGTCAGCAGCGAGGCTCTCGTGGGAGCCGGAGGGATGGTCAAGTCACTGAAAGTGGTTCTCGAGTTGAGAGAGCCCGTGATGGATTGTTAACTGAGCATGATGAGGGCCAGCCAGAGCATATACGCAGAGATTTGTTGAGATTGCGTGGAAGACAAGCTCTGGTTGATTTGCTTGTGAGGGTTGAAAGGGAAAGACAAAGAGAGCTGCAGGGCTTGTTGGAGCACCGCGCCGTTTCTGATTTTGCTCATCGTAATCGCATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTATAGAAGATGAGAGGCCTCCTTCTGTGGCTGCAAATGAATTAGTTCAGTTAAGACAACGTCACACAGTCTCTGGTTTAAGAGAAGGGTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCAAGCTAGCAGCAATTCTGATTCCACATCTAATAGTAATACCAGTGAAACTAGAAGTGATGTGAACCAAGAAAACAATTCAATAGATGCTCAGCATGAAAGTTTTGAACAAGGGCCGATTAGGAGCATGGAAACTGATGTTCAGCAGTTGGCTGATCAAACAGGAACTTTTGAAAGTAGCACTAGTGAGAGTATAAGTTGGCAAGAAACTAGTAATCAAGGAGGGAACTGGCAGGAACAAGTTACTGAAGATGGTCATGGAAATTGGCAACAGAGAGCTTATGGTCCATTGAATCAGTTAAGAGATGGAAGTGCTGTTAGTGATTGGCGTCAGGATTCTCCGATAAATGGAGAAGGGGAAGATGCTCATCCACGAGAAGCTTGGGGAATTTGGCGTGAGGATAATTCAAGAGAAGCTGCAGGTAATTGGTCTGAAGAACCTTCTGGTCCTCCAAGGAATCGACTTGGTGTTCCTTTTAGGAGATTCAATAGATTTCATCCACCTGATGATGAAAATGTATATAACACGGAGCTTAGAGAACTTTTGAGCAGGAGAAGTGTTTCCAATCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAATTAATCCAGTCATACGTGGAAAGGCAAAATGTTGCACCTATTGACTGGGATTTGCACAGAAACTTGCCAACACCAACTCCTGCCTCACCTGATAGGGATCCTGAACAACAGGCAGATGAACGTAACGGCGTTCAACATGACGTCATTAATAGGCCTTCTCTAGTGTTGCCATCTCCACCAGTTCCTCCGCCTCAACCACTTTGGCACCAGGACTTGCATCAGACTGGTTGGTCTCGCCATAGCATACATCGATCTGAAATTGAATGGGAGATAATCAATGATTTGAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGCATGGATATGCAACTGGAGTTACAGCGCTCTGTCAGACAGGAAGTGTCTGCAGCGCTGAATCGTTCAGCGGGTGAAAGTGGAATGGGGGCCGAGACATCTGAGGATGGGTCTAAATGTGGCCATGTGAAAAAAGGAACTTGTTGTGTTTGTTGTGATAGCCATATTGATTCGCTCTTGTACAGATGTGGCCACATGTGCACTTGTTCAAAATGTGCCAATGAGATAAAATGTGGTGGAGGGAAGTGCCCTTTATGCCGAGCACCTATTGTGGAGGTGATCCGAGCATATTCCATTATGTAA 2511 0.4671 MFERGLEDFMRGHLDDCMSFASCSSARTQDGEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAAHQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQTPPSGQEGAVERPSTQASAILQMWRELEDEHSLNRARGRMRERLRQQRVADSNANGSSTLSDSRGSENQGSLVDASESENDYGTWSHDQIQSQHENGDRNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSCNASQRNNNCRAEWLGETERERVRIVREWLQMTSQQRGSRGSRRDGQVTESGSRVERARDGLLTEHDEGQPEHIRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSVAANELVQLRQRHTVSGLREGFRSRLENIVRGQASSNSDSTSNSNTSETRSDVNQENNSIDAQHESFEQGPIRSMETDVQQLADQTGTFESSTSESISWQETSNQGGNWQEQVTEDGHGNWQQRAYGPLNQLRDGSAVSDWRQDSPINGEGEDAHPREAWGIWREDNSREAAGNWSEEPSGPPRNRLGVPFRRFNRFHPPDDENVYNTELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQNVAPIDWDLHRNLPTPTPASPDRDPEQQADERNGVQHDVINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSIHRSEIEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGESGMGAETSEDGSKCGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANEIKCGGGKCPLCRAPIVEVIRAYSIM 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0014 836 MobiDBLite consensus disorder prediction 24 60 - -
Lele45g0014 836 MobiDBLite consensus disorder prediction 638 661 - -
Lele45g0014 836 MobiDBLite consensus disorder prediction 523 542 - -
Lele45g0014 836 CDD mRING-HC-C3HC5_NEU1 783 823 - -
Lele45g0014 836 ProSiteProfiles Zinc finger RING-type profile. 784 823 IPR001841 -
Lele45g0014 836 MobiDBLite consensus disorder prediction 151 226 - -
Lele45g0014 836 Pfam Zinc finger, C3HC4 type (RING finger) 781 828 - -
Lele45g0014 836 MobiDBLite consensus disorder prediction 417 447 - -
Lele45g0014 836 MobiDBLite consensus disorder prediction 279 315 - -
Lele45g0014 836 SUPERFAMILY RING/U-box 783 829 - -
Lele45g0014 836 MobiDBLite consensus disorder prediction 467 502 - -
Lele45g0014 836 MobiDBLite consensus disorder prediction 161 203 - -
Lele45g0014 836 MobiDBLite consensus disorder prediction 107 128 - -
Lele45g0014 836 Coils Coil 713 733 - -
Lele45g0014 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 766 834 IPR013083 -
Lele45g0014 836 MobiDBLite consensus disorder prediction 28 60 - -
Lele45g0014 836 MobiDBLite consensus disorder prediction 289 315 - -
Lele45g0014 836 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 92 836 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0014 Lele-ChrLele45 314845 319683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0014 752 830 C3H Transcription Factor Family AT3G06140 34.177 2.54e-07 52.0