Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0001 ATGTCACAGGCTTTGCAGAGGAATGAAATGGCAGAAAAGTTCCAACAAATAAATGACCGAATTGAAACAGCAATTAATTTGGATTTAGCTGTAGCACAACAAGAAAAAGACCCCGATCCTGAAATACTCGATAGGCTTTCTGAGAAGTTGCATCTGAAGACTATAAATGACCTCAAGAAAGAATCAGCGGAATTACATGAATTGGTGATTGCAAGTGGTGGAGAACCAGGGGACTTTATTGAGATGATGCCATCTCTTCTTAAGAGACTGAAGGATTGTGTGCTCAATGAAAACCCTGAAGTTGAACCCCGTAAGGGTGAAAAAAATTCAATGAAGCACAGATCTCCTGTAATTCCAGATGATTTTAGATGTCCAATATCTCTTGAACTAATTAAAGATCCTGTAATTGTCTCTACTGGACAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATGCTGGGAACAACACATGTCCCAAGACGCAACAAACACTTTTGCACACAGCCCTAACCCCTAACTATGCTTTGAAGAGTCTGATTGCTTTGTGGTGTGAAAACAATGGTGTTGAGCTGCCAAAAAAGCAACGGAGCTGTAAAACAAAGAAATCTGGAAGCAGTCTTTCGGATTGTGATCGAACTGCTGTTAATGCTTTATTGGATAGGCTAGCAAATGGAGCAATACCGCTTCTTGTAGAGTTGCTGTCTTCCTCAGATCCTCGAACCCAGGAGCATGCTGTCACAGCGCTTCTCAATCTGTCCATCAATGAGAGTAACAAAGGAACAATTGCAAATGCAGGAGCTATACCAGATATTGTAGATGTGCTGAAAAATGGAAGTATGAGAGAAAATGCAGCTGCAACTCTCTTTAGTTTGTCGGTTATAGATGAGAAAAAGGTTGCAATAGGAGCAGCTGGGGCTATCCCTGCTTTGATTAGCTTGCTTTGTGAAGGCACTCCCAGAGGTAAAAAGGATGCTGCTACAGCTTTTTTTAACCTTTCTATCTATCAAGGAAACAAAGCTAGAGCTGTAAAGGCTGCCCTAGCTATACTGGCAATTCTTGCAAGCCATCCAGAAGGCAGGACAGCAATTGGTCAAGCTGAACCTATTTCTATTCTAGTAGAGGTTATACGAACTGGTTCCCAACGGAACCGAGAGAATGCTGCTGCTGTGTTGTGGTCGCTTTGCATGGGAGATCTTCTGCAGTTGAACCTAGCAAGAGACCGTGGTGCGGAAGAAGCACTGCGGGAATTGTCAGAAAATGGCACTGATAGGGCCAAAAGGAAAGCGGGAAGTATATTAGAACTCTTGAAAAGAATGGAAGTGGAAGATAATTTGCCGAAGGGTTAA 1350 0.4237 MSQALQRNEMAEKFQQINDRIETAINLDLAVAQQEKDPDPEILDRLSEKLHLKTINDLKKESAELHELVIASGGEPGDFIEMMPSLLKRLKDCVLNENPEVEPRKGEKNSMKHRSPVIPDDFRCPISLELIKDPVIVSTGQTYERSCIQKWLDAGNNTCPKTQQTLLHTALTPNYALKSLIALWCENNGVELPKKQRSCKTKKSGSSLSDCDRTAVNALLDRLANGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIANAGAIPDIVDVLKNGSMRENAAATLFSLSVIDEKKVAIGAAGAIPALISLLCEGTPRGKKDAATAFFNLSIYQGNKARAVKAALAILAILASHPEGRTAIGQAEPISILVEVIRTGSQRNRENAAAVLWSLCMGDLLQLNLARDRGAEEALRELSENGTDRAKRKAGSILELLKRMEVEDNLPKG 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0001 449 Gene3D - 341 446 IPR011989 -
Lele45g0001 449 FunFam RING-type E3 ubiquitin transferase 117 191 - -
Lele45g0001 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 191 IPR013083 -
Lele45g0001 449 SUPERFAMILY RING/U-box 109 193 - -
Lele45g0001 449 PANTHER U BOX DOMAIN-CONTAINING 17 437 - -
Lele45g0001 449 SMART arm_5 256 294 IPR000225 GO:0005515
Lele45g0001 449 SMART arm_5 357 397 IPR000225 GO:0005515
Lele45g0001 449 SMART arm_5 295 335 IPR000225 GO:0005515
Lele45g0001 449 SMART arm_5 215 255 IPR000225 GO:0005515
Lele45g0001 449 Pfam Armadillo/beta-catenin-like repeat 225 254 IPR000225 GO:0005515
Lele45g0001 449 Pfam Armadillo/beta-catenin-like repeat 297 334 IPR000225 GO:0005515
Lele45g0001 449 SUPERFAMILY ARM repeat 224 437 IPR016024 -
Lele45g0001 449 Gene3D - 206 340 IPR011989 -
Lele45g0001 449 ProSiteProfiles U-box domain profile. 117 191 IPR003613 GO:0004842|GO:0016567
Lele45g0001 449 SMART Ubox_2 121 184 IPR003613 GO:0004842|GO:0016567
Lele45g0001 449 CDD RING-Ubox_PUB 122 164 IPR045210 -
Lele45g0001 449 Pfam U-box domain 118 188 IPR003613 GO:0004842|GO:0016567
Lele45g0001 449 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 226 268 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0001 Lele-ChrLele45 236310 238212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0001 13 441 U-box Gene Family AT3G54850 61.443 0.0 540