Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1312 ATGAAGGAGAGGCAACGTTGGAGAGCTGAGGAGGACGCATTATTACGTGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCCCAGCGCATGAACACACCCCTTAACAGGGACGCCAAATCTTGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGATCTCTCACTGAAGAAGAGCAAGGACTTGTCATCCGACTTCAGGCAAAACACGGCAACAAATGGAAGAAAATTGCTGCGGAAGTCCCAGGTCGCACTGCTAAGAGGTTAGGTAAGTGGTGGGAAGTATTTAAAGAAAAGCAGCAGAGGGAAAAAAAGGACATCAATAAAACAGTTGACCCAATTGACGACACTAAGTACGATCATATACTTGAGACTTTTGCTGAGAAGCTTGTGAAAGAACGCCCTTCACCATCCTACCTTATGGCTGCTTCCAATGGAGCTTTTATTCACACGGATGCATCAGCTCCTACGTCAGCTATGCTTCCTCCATGGCTTTCAAACTCAAATAACTCTACAACTATTCGGCCACCTTCCCCTTCTGTGACGTTAAGTCTCTCTTCCTCAACTGTAGCTGCACCACCTCCTTTTCAATGGTTACAACCTGAGAGAGCGGCAGAGAATGCTTCTCTCGTTATAGGGAATGTAACACCTCACGGAACTAATCCAGCTTTTGGTGATAACATGGTAGTATCTGAGCTAATTGAGTGCTGTAAAGAGTTGGAAGAAGGGCATAGGGCACTGTCATCCCACAGGAAGGAAGCAGCGTGGAGGCTAAGGCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCGTGTCGGAGGCGGGAGAAGATGGAAGAGATTGAAGTGAAGATTAAAGCTCTCCGGGAAGAAGAGAAGGCTGCGTTGGATAGAATTGAGGCAGAATACCGGGAACAGCTAGCTGGACTGAGAAGAGATGCAGAGACCAAGGAGCAGAAGTTGGCTGAGCAATGGGCTGCAAAGCACTCAAAGCTTAATAAGTTTCTAGAGCAGATGGGGTGCAGAACCAGGCTTGCTGAGCCAAATGGAAGATGA 1074 0.4749 MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQGLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKDINKTVDPIDDTKYDHILETFAEKLVKERPSPSYLMAASNGAFIHTDASAPTSAMLPPWLSNSNNSTTIRPPSPSVTLSLSSSTVAAPPPFQWLQPERAAENASLVIGNVTPHGTNPAFGDNMVVSELIECCKELEEGHRALSSHRKEAAWRLRRVELQLESEKACRRREKMEEIEVKIKALREEEKAALDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHSKLNKFLEQMGCRTRLAEPNGR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1312 357 FunFam MYB-related transcription factor 4 58 - -
Lele44g1312 357 Pfam Myb-like DNA-binding domain 7 67 - -
Lele44g1312 357 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 352 - -
Lele44g1312 357 Gene3D - 62 120 - -
Lele44g1312 357 CDD SANT 6 53 IPR001005 -
Lele44g1312 357 Gene3D - 4 58 - -
Lele44g1312 357 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lele44g1312 357 CDD SANT 63 104 IPR001005 -
Lele44g1312 357 SMART sant 58 106 IPR001005 -
Lele44g1312 357 SMART sant 3 55 IPR001005 -
Lele44g1312 357 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Lele44g1312 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Lele44g1312 357 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Lele44g1312 357 Coils Coil 284 326 - -
Lele44g1312 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1312 Lele-ChrLele44 21359371 21360444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1312 1 348 MYB Transcription Factor Family AT2G37630 67.397 8.25e-167 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele44g1312 Myb_DNA-bind_6 4.4e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g1312 44 21359371 21360444 Lele44g1312 44 21359371 21360444 ECH
Lele41g0039 41 277659 278732 Lele44g1312 44 21359371 21360444 hybridization
Lele42g0040 42 294311 295381 Lele44g1312 44 21359371 21360444 hybridization