Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1295 ATGGCTTCAGTGGGATCCTCCTATTGGTGCTACAGATGCAATCAGTTTGTTAGGGTTCGAATTGGGGCTGAAGAAACCTTGCTTTGCCCTGATTGTGGGTATGGTTTTATAGAAGAAATCAGGACTCGTACTCACTCTCCTTTCCAACGATTCCCTTCACCTTCAATGTATGTCGACGATGAATCTAGCTCCGAGCAAGGAGCCAGCCCAAGAATCCGCCGTGGCTCGAGGAACGCCGGCGATCGATCCCCTTTTAACCCTGTTATCGTCCTCAGTGGGCCCGCCGATGGCGGTGGCGGTGGAAATGAAGGGGTTGGTATTGAAAGAGGGAACTTTGAGCTTTATTACAATGAAGGTACAGGTTCGGGTCTTCGGCCGCTTCCTGCAAGTGTCACAGAGTTCTTAATGGGTGCTGGATTTGACCACCTTCTTGACCAGTTGACTCATTTAGAAGTCACCGGAATCGGACGATTAAATCAAACTCCGGCATCAAAATCTGCAATCGAATCGATGCCCAACGTCAAGATTGTTGCCACACATGTTTCGGCTGAATCGCATTGCGCAGTTTGTAAGGAACCCTTCGAGCTTGACTCGGATGCTCGTGAAATGCCTTGTAAGCACATTTACCATTCTGATTGTATCCTTCCATGGCTATCAATTCGTAATTCCTGTCCAGTTTGTCGCCATGAGTTACCTACTGAGATGCGTGGGAGTAGTAGTGGCAGAAACTCCCCTGTGTCAGACGGTGCAAGGGATGATCATACTGTGGGATTAACTATATGGAGACTACCTGGTGGTGGTTTTGCTGTTGGAAGGTTCACTGGTGGAAGAAGAGCTGCCGAACGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTCAATAGTGGGGGGGTTCCACGGAGGATATCTTGGGAAACGAGCGTGAGGAGATCAAGGGAGTCTCGGGGATTAGGTAGTGCTTTGCGGAACTTCTTCTCACACTTCGGGTGGCTTAGGACTTCCTTCTCTCGTTCTTCCAGAACTGATTCAAATTCTGGAGTTACTGCATTTAAATTTGGGAAGGATAGAATTTTGGAATTTTTATGTGGTAAGATTTTGTTAGAATGGAAGAAAGTTATGCAGTTAAGGGTGGGTGCCTTCAGCCAGTTGCATGCCTTTGCCAGATTTGACTGCCTTACTGCCTTTATTTGGGAATCCATGTGCATCACTGGTTTTATTTCTGAACCACTTGATGATGACCAGCTCATAGATAGATATAGCAGTATAACAGCATCACTGGAATTAGATGATATATGGGGCTGTTCCCTACTTTGCTTTTACTCTCATCTTTTTTGGCTGTGGATGAATAGGATAGGAGCTGTCTTGGACATGTCTTGTTCTCTGGTTGCCGCAGCTTCCTCCTTTCCAATCATGGCATCACTAACACCGTTTCAGGCTCTACTTCCCAGAACTTGTCCATCATCCGCTTCACTTTCAGCGCCTGCATCAGCATGGAGTGTGCTTCACACTAAGAGCAAAAGGAAAACACCTCTAACGGTGGTTGCCGCCGTGGGGGAGCTCTCTTCTGATAGCACCACCTACCTCATCGCCGGTGCCATCGGTGTAGCCCTCGTTGGAACTGCCTTTCCCATCCTCTTCTCTCGCAAGGACACATGCCCTGAATGTGACGGAGCAGGGTTTGTTCGGAAATCTGGGGCGACTTTGAGAGCAAATGCCGCAAGAAAAGACGAAGCTCAAATTGTATGTGCACGTTGCAATGGTCTTGGAAAACTTAACCAAATAGACAAATAG 1797 0.4741 MASVGSSYWCYRCNQFVRVRIGAEETLLCPDCGYGFIEEIRTRTHSPFQRFPSPSMYVDDESSSEQGASPRIRRGSRNAGDRSPFNPVIVLSGPADGGGGGNEGVGIERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLTHLEVTGIGRLNQTPASKSAIESMPNVKIVATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTEMRGSSSGRNSPVSDGARDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSGGVPRRISWETSVRRSRESRGLGSALRNFFSHFGWLRTSFSRSSRTDSNSGVTAFKFGKDRILEFLCGKILLEWKKVMQLRVGAFSQLHAFARFDCLTAFIWESMCITGFISEPLDDDQLIDRYSSITASLELDDIWGCSLLCFYSHLFWLWMNRIGAVLDMSCSLVAAASSFPIMASLTPFQALLPRTCPSSASLSAPASAWSVLHTKSKRKTPLTVVAAVGELSSDSTTYLIAGAIGVALVGTAFPILFSRKDTCPECDGAGFVRKSGATLRANAARKDEAQIVCARCNGLGKLNQIDK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1295 598 Pfam Protein of unknown function (DUF1117) 256 348 IPR010543 -
Lele44g1295 598 SUPERFAMILY RNA polymerase subunits 7 48 IPR029040 -
Lele44g1295 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Lele44g1295 598 FunFam E3 ubiquitin-protein ligase RING1-like 149 234 - -
Lele44g1295 598 Pfam zinc-ribbon 7 40 IPR039525 GO:0061630
Lele44g1295 598 Pfam Ring finger domain 186 228 IPR001841 -
Lele44g1295 598 PANTHER OS05G0110100 PROTEIN 477 598 - -
Lele44g1295 598 MobiDBLite consensus disorder prediction 47 87 - -
Lele44g1295 598 MobiDBLite consensus disorder prediction 232 251 - -
Lele44g1295 598 CDD RING-H2_RNF181 187 231 - -
Lele44g1295 598 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Lele44g1295 598 SMART ring_2 187 227 IPR001841 -
Lele44g1295 598 MobiDBLite consensus disorder prediction 47 71 - -
Lele44g1295 598 SUPERFAMILY RING/U-box 167 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1295 Lele-ChrLele44 21237528 21243750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1295 126 242 C3H Transcription Factor Family AT5G01980 43.590 1.68e-25 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g1295 44 21237528 21243750 Lele44g1295 44 21237528 21243750 ECH
Lele41g0057 41 420500 421019 Lele44g1295 44 21237528 21243750 hybridization
Lele42g0058 42 439835 441552 Lele44g1295 44 21237528 21243750 hybridization