Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1286 ATGGAAGAAGGTCAATGTTGGATTTGGAGAAAGAGAAAGAACTCATCTTTCAGCTCTTATAATAATAGTCTTGCTTCACCGACTCACAAGTTCAGCTATGGCGATTCATGGGAAGAACAAGCTTTTGCAGAAGATGAGCGTCTTGGTGGCTGTATCTGGCCCCCAAGATCATACTCTTGCAGCTTTTGCAGCAGAGAGTTCAGGTCAGCCCAAGCTCTTGGTGGCCACATGAATGTTCACAGAAGAGATAGAGCTCGGCTAAAGCAACCCCCAAGTCCACAAAATAAACACGATGATCAAACCAGTAGTCTTCTTGATCATAAAAGTTCCTTCACATCTTCTTCTCTTGCTTATTCCAACGCTAACCCTAATGATTCTGAAATTCTTGCTTCTGAGGAGTCTAAATTAGCCCCTCCATCATCTTTGATTCAAGAGAATTTCCCTCCATACGATTCTTGTATTTCATGGTCAAACTTTGCTCAACAAAGATTATATTCTCGAAAGGTCGATCTTATTACTGATCGTAATAAGGAAAAACAAGCTGATATTGTGAGCTACAAGAGGAGAAGAATTATAACAGATGATTCATCATCAATTCGATTGATCTCCTCAAAATCAATTCCAGTTGATCATATCAAGTCTCAGATGTTCGAGTTTCTCAGTCCTAGTTCCATTGAAGAGCTAGATCTGGAGCTGAGGCTTGGTCACAGTCCTCCCAAGGTCACTACTGACATTCCATCAGAGACAGGTAAACATACTGATATTGAGCTTTTCAAAAGCCATATAAAGTCAGATACATCCCAACATTGA 810 0.4049 MEEGQCWIWRKRKNSSFSSYNNSLASPTHKFSYGDSWEEQAFAEDERLGGCIWPPRSYSCSFCSREFRSAQALGGHMNVHRRDRARLKQPPSPQNKHDDQTSSLLDHKSSFTSSSLAYSNANPNDSEILASEESKLAPPSSLIQENFPPYDSCISWSNFAQQRLYSRKVDLITDRNKEKQADIVSYKRRRIITDDSSSIRLISSKSIPVDHIKSQMFEFLSPSSIEELDLELRLGHSPPKVTTDIPSETGKHTDIELFKSHIKSDTSQH 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1286 269 Gene3D Classic Zinc Finger 55 116 - -
Lele44g1286 269 MobiDBLite consensus disorder prediction 77 93 - -
Lele44g1286 269 PANTHER OS07G0101800 PROTEIN 33 238 - -
Lele44g1286 269 Pfam C2H2-type zinc finger 58 82 - -
Lele44g1286 269 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Lele44g1286 269 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lele44g1286 269 SMART c2h2final6 58 80 IPR013087 -
Lele44g1286 269 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Lele44g1286 269 MobiDBLite consensus disorder prediction 74 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1286 Lele-ChrLele44 21200000 21201642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1286 38 241 C2H2 Transcription Factor Family AT5G06070 36.967 2.34e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele44g1286 zf-C2H2_6 1.1e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g1286 44 21200000 21201642 Lele44g1286 44 21200000 21201642 ECH
Lele41g0065 41 468812 474830 Lele44g1286 44 21200000 21201642 hybridization
Lele42g0067 42 482807 483532 Lele44g1286 44 21200000 21201642 hybridization