Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1271 ATGGAGGAGGGTTTTGAGCCTTACCATGTTCCTCAGCAAAGCAGGAGAGACAAGCTAAGGGTCAGTTTTCACAACCAGCAGTCTTCTCTCCCCACGGCGGCTTGCGCAGGTTTACTCCCTGTCACTGACCCTTCTCTTATTCCCTCCGATCTGCTAACTTGCGCCAGCAATAATCTTCAATCCTCCAATTTGCAAATATACCCTGCAACTGTGCAAATTATCAACAGCAACCCTTTTCTTAACTTTCCTCTTGCTCAAACCCTTCGCTCCGAGCCATTGTCTTTATCTCTCTCCTCCTCCCACAGTCACTACAGTAATCCCCCACTTGAGCTGAATCTCCAGAGATATGATGGCGGCTCCGTGAACATCCCGGCTAACGACGCCGTTTTAAGAAGCTCCGTCGTTCCGCTGGGGCCGTTTACGGGGTATGCTTCGGTGTTGAAGGGATCGAGGTTTCTGAAGCCAGCTCAGCAGTTATTGGAGGATCTTTGCGACGTTTGGGGCCGTGAACTTTGCGCCGCAGAAAATATGACGGCGGATGCTTCGTTGATGGAACCTCCTCCGTCGTCGGAGAGCCTCGGCTCCTACGATCCGCCGCCGACGCTTGGTGAGGGCGGAGGGGAGGGTGGGAAGAAAAAGTCGAGACTGTTAATGATGCTTGATGAGGTGTACAGAAGGTACAGGCAGTACTATCAACAGATACAAGCAGTAGTAACTTCATTTGAGTATGTTTCAGGCCTTGGTGACGCTGCTCCTTATGCGATCTTGGCTATAAATGCCATGACCAAGCATTTCAAATGCTTGAAGACTGTGATCATGGACCAGCTTCACTTCACTTCTAATAAGGCTCATTTTCACAACCTGAGCAACAAAAGGGACGAATCTCCAGGGTTTATTGGAAATGTCGACCATAGAGGAGGAGTAGGACCTTACAGCCAAATTAGGGATTCTCAGAACCCCGAATTATTAGGGAACCAACCAATCTGGCGACCTCAACGTGGACTCCCCGAGTGTGCTGTAACCGTTCTTAGGGCATGGTTGTTCGAGCACTTTCTACATCCATATCCTACTGATACGGACAAGCTGATGCTGGCGAGACAGACCGGTCTGTCTCGTAGCCAGGTTTCAAACTGGTTCATTAATGCAAGAGTAAGGTTGTGGAAACCAATGGTTGAAGAAATACACATGTTAGAAACACGACAGTCTCAAAAGAATCATCAGAACACAGATCAAGATTACAGAAACAAGAACAAGCCCAGCACAAGTGACAAGTTTCAAGATGATGCTCCTTTTAAACGCACCAGAAATTATGAACCTACGAGTCGTGATATGTCTGCTACAATGAGGAATCATCAGCTGCCTTGTAATGCAATAAGCAATGTTAATAACATTAATAATCAGGCAGTGAGTGTTGGAGCAGTGGCCAATAGCGTGTCGCTCACACTGGGTCTCCACCAGAACAACGGTGGGCTTGCTCTATCTGAACCTTTTCCCATGAGTGAAGCTCTCCGTTTTGGGCTTGCCCTAGAAGTACCGAGTAACGAAGAGTATGTAATGAGTGGCTCTGAGTCGCAGAATCGGCATTATGGAAGAGAGCAGGTGATTGGAGGGCAACTTGTGCATGACTTTGTGGGCTAA 1638 0.4811 MEEGFEPYHVPQQSRRDKLRVSFHNQQSSLPTAACAGLLPVTDPSLIPSDLLTCASNNLQSSNLQIYPATVQIINSNPFLNFPLAQTLRSEPLSLSLSSSHSHYSNPPLELNLQRYDGGSVNIPANDAVLRSSVVPLGPFTGYASVLKGSRFLKPAQQLLEDLCDVWGRELCAAENMTADASLMEPPPSSESLGSYDPPPTLGEGGGEGGKKKSRLLMMLDEVYRRYRQYYQQIQAVVTSFEYVSGLGDAAPYAILAINAMTKHFKCLKTVIMDQLHFTSNKAHFHNLSNKRDESPGFIGNVDHRGGVGPYSQIRDSQNPELLGNQPIWRPQRGLPECAVTVLRAWLFEHFLHPYPTDTDKLMLARQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQSQKNHQNTDQDYRNKNKPSTSDKFQDDAPFKRTRNYEPTSRDMSATMRNHQLPCNAISNVNNINNQAVSVGAVANSVSLTLGLHQNNGGLALSEPFPMSEALRFGLALEVPSNEEYVMSGSESQNRHYGREQVIGGQLVHDFVG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1271 545 Pfam Associated with HOX 146 272 IPR006563 -
Lele44g1271 545 CDD homeodomain 329 390 IPR001356 GO:0003677
Lele44g1271 545 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 411 - -
Lele44g1271 545 MobiDBLite consensus disorder prediction 181 210 - -
Lele44g1271 545 Gene3D - 332 394 - -
Lele44g1271 545 SUPERFAMILY Homeodomain-like 331 396 IPR009057 -
Lele44g1271 545 FunFam BEL1-like homeodomain protein 9 332 394 - -
Lele44g1271 545 MobiDBLite consensus disorder prediction 399 442 - -
Lele44g1271 545 Pfam Homeobox KN domain 346 385 IPR008422 GO:0003677|GO:0006355
Lele44g1271 545 ProSiteProfiles 'Homeobox' domain profile. 348 389 IPR001356 GO:0003677
Lele44g1271 545 MobiDBLite consensus disorder prediction 399 439 - -
Lele44g1271 545 SMART HOX_1 329 393 IPR001356 GO:0003677
Lele44g1271 545 SMART prehox3 141 274 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1271 Lele-ChrLele44 21067632 21072168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1271 1 545 Homeobox Transcription Factor Family AT5G02030 42.036 1.90e-103 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele44g1271 POX 1e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g1271 44 21067632 21072168 Lele44g1271 44 21067632 21072168 ECH
Lele41g0082 41 619891 624252 Lele44g1271 44 21067632 21072168 hybridization
Lele42g0084 42 628252 631928 Lele44g1271 44 21067632 21072168 hybridization