Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1255 ATGTCATCAACTATACATATTTCCGTTGTAGATTTGGAGCAGGGAAGCCATCGCAGTGACATGAGTGCCGAGGCTAGCATTTGTTTCTCTGATGTTGAAGAGGGTTCCTCATATTCCCACTTCTATTCAACAAATGGTGGCTCATACGATGACTATAGTTTTGCTTTTGTTTCTGATCCTGAGGTTATTGAGGATGTTCCTGATTCTGCAAGAGCTTCTTCTGTCACTGAATGTTCAGTGGAAGTGGAAATTGAAAATGGGGTTCCTGAAATTAAGTTGCATTTGGACATTGTAGAGAGAGAGTGTAGGATTTGTCACATGGGTTTGGAAAGTGAAAGCCTTGAATCTGGGGTTCCAATTGAATTGGGTTGTTCCTGCAAGGATGATCTTGCTGCTGCTCATAAACTTTGTGCTGAAACTTGGTTCAAGATTAAAGGGAACAGGACCTGTGAGATCTGTCATTCTGTGGCGCGGAATGTTTTTGCGACGAATGAGGAGATGACCGAGAATTTAAGTGACAGCAGCAATGCCATCACTTTGTCCACACTTCCGACGCTGGCTTCCCCGGAAACTCCTCGAAGATTTTGGCAAGGCCGTGGCTTCCTGAATTTGTTGCTTATTTTTATGGTTATCGCATTTGTCATATCATGGGCTTTTCACTTCCATTTTCATTCACCTTAG 681 0.4302 MSSTIHISVVDLEQGSHRSDMSAEASICFSDVEEGSSYSHFYSTNGGSYDDYSFAFVSDPEVIEDVPDSARASSVTECSVEVEIENGVPEIKLHLDIVERECRICHMGLESESLESGVPIELGCSCKDDLAAAHKLCAETWFKIKGNRTCEICHSVARNVFATNEEMTENLSDSSNAITLSTLPTLASPETPRRFWQGRGFLNLLLIFMVIAFVISWAFHFHFHSP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1255 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 164 IPR013083 -
Lele44g1255 226 SUPERFAMILY RING/U-box 98 157 - -
Lele44g1255 226 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Lele44g1255 226 CDD RING_CH-C4HC3_MARCH 102 154 - -
Lele44g1255 226 Pfam RING-variant domain 102 153 IPR011016 GO:0008270
Lele44g1255 226 PANTHER ZINC FINGER, RING-CH-TYPE 16 223 - -
Lele44g1255 226 SMART ringv_2 101 154 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1255 Lele-ChrLele44 20943184 20945922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1255 64 225 C3H Transcription Factor Family AT5G05830 56.098 2.43e-57 179
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g1255 44 20943184 20945922 Lele44g1255 44 20943184 20945922 ECH
Lele41g0093 41 734548 737323 Lele44g1255 44 20943184 20945922 hybridization
Lele42g0097 42 755093 757879 Lele44g1255 44 20943184 20945922 hybridization