Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1243 ATGCTTCAGATACGGCTTAGTAAGTTACCAGCCTCGGAAGGTTCAGCAGGGATGAGATCCGCACCTGTTGAGACTGCAATTGCATGCCCCGACCATCTAGTCCTTGCTGACCTGCCTGTGGCAAAGGGTATCGGTGCAGCCACTGCCACTTCACTTATTAAGACTTTAGGACGGAGGTCCCGCCGCCAGCTTGGCAATAGAGTTCATTTCTGTGTTCGTTGTGATTTTCCCATTGCTATCTATGGACGACTGAGCCCTTGTGAGCATGCCTTCTGCCTTGATTGTGCTAGAAGTGACCCAATGTGCTGCCTGTGTGATGAACGAATCCAGAAGATTCAAACCATCAAAATGATGGAAGGAATCTTTGTTTGCGCTGCTCCTCATTGTCTCAAGTCTTTCTTGAAGCAGACTGAATTTGAATCTCACATCCAAGAAAAGCACTCAGATCTTCTTCGGCCTAATGCAGAGAGAGAAGATGGAAATGAGTCCGAGGCGCAGAGTGTTAGGCAGTCTACAGCATCAGAGTGCACTGCTCAAGGTCCCCATAGGCCCGTTTTTTCTCCTGGTTCAAAGTCACAGCCTCATGATTGGGATGACAAAGGTCGTCAACAGTCAATGAGAGAGCAGCCCCCTTCAAGGCCAATTCAACAACCAAAGCCACCACTTTTTGGCCAAGCACTTGATCCTTCTTCGGATCCCCAATCAGGCAACACTGGAGCTATTCAACAGGATTTCCATCCACAGAGCTTTGACACGAAGCACTCGGAACGCAAACCCTCTCATCTTGTTGAGAGACAGCAAGGAGTTACTTCAGTGACCCCAATTCGTGATTATCCACCCATGCATTATGTCCAGCCACCCAATGTTGCCATGCAAGTTAATCCTAATGCATTGCCGAAACCTCCTATGGCATTTAGTTACCCCCCTTACCCACAAGACGGAGCTCATCCCTTTTATGCCACATCCTATGGCATGCCCAGGCAGAACTCATCTTCTGAAATGGGTTTAGATCAGAGTTCATTACTGGGATACCCACCAGGTCCTGTAAGTGGCCCAAATTTTGCAGCAAATTATCCTCACGCCTGGAATGCAGGAATGACTGGCGTACCTTTTGATCAAGCTCAGGGTGGTATGATTATTGATCCAAGGGATGCTAAAGGGATGTAG 1167 0.4824 MLQIRLSKLPASEGSAGMRSAPVETAIACPDHLVLADLPVAKGIGAATATSLIKTLGRRSRRQLGNRVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDPMCCLCDERIQKIQTIKMMEGIFVCAAPHCLKSFLKQTEFESHIQEKHSDLLRPNAEREDGNESEAQSVRQSTASECTAQGPHRPVFSPGSKSQPHDWDDKGRQQSMREQPPSRPIQQPKPPLFGQALDPSSDPQSGNTGAIQQDFHPQSFDTKHSERKPSHLVERQQGVTSVTPIRDYPPMHYVQPPNVAMQVNPNALPKPPMAFSYPPYPQDGAHPFYATSYGMPRQNSSSEMGLDQSSLLGYPPGPVSGPNFAANYPHAWNAGMTGVPFDQAQGGMIIDPRDAKGM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1243 388 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Lele44g1243 388 MobiDBLite consensus disorder prediction 145 164 - -
Lele44g1243 388 MobiDBLite consensus disorder prediction 249 263 - -
Lele44g1243 388 MobiDBLite consensus disorder prediction 145 277 - -
Lele44g1243 388 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Lele44g1243 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 122 IPR013083 -
Lele44g1243 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 148 IPR013087 -
Lele44g1243 388 MobiDBLite consensus disorder prediction 228 248 - -
Lele44g1243 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 377 IPR040383 GO:0016567|GO:0061630
Lele44g1243 388 CDD RING-HC_HAKAI_like 69 105 IPR040380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1243 Lele-ChrLele44 20868746 20872002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1243 1 366 C2H2 Transcription Factor Family AT5G01160 47.895 1.23e-99 298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g1243 44 20868746 20872002 Lele44g1243 44 20868746 20872002 ECH
Lele41g0107 41 804493 805196 Lele44g1243 44 20868746 20872002 hybridization
Lele42g0108 42 826359 835962 Lele44g1243 44 20868746 20872002 hybridization