Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1229 ATGAGATCAATTGCAGTGCTATATTTGCACAAGCAAGGTTTACCAGGCCACAAAGTCATTGGTGATTACTTTAAGGTTTCTATATTAGATTTACAGTATGGAGCACTATATAGCAATACCTTGTTTTGTTTAGTATTGCTTGAGAAAATAGAAATAGAGCGGGGGCCGACTGGGAGAAGGAAAAAGAGAAGAAGGGTTTCAGAAGGCGAGGGAGACAAATCTGATAGTTTTGAGATGGACGTGATAAAATCTCAGCAAATTTCGTCGAGGCCCATCGAGAAGGTCATAGTGCATCCCCTGGTTCTTCTCAGCATCGTCGATAACTACAATCGGGTCGCCAAGGACACTCGCAAACGTGTCGTCGGCGTCTTGCTCGGTAGTTCATTTAAGGGCACCGTCGATGTTAGCAACAGCTATGCGGTGCCATTTGAGGAAGACGACAAGGACCCAAGCATCTGGTTCCTTGATCACAATTACCATGAATCCATGTTTTCTATGTTCAAGAGAATAAATGCCAAGGAGCATGTTGTGGGATGGTATAGTACGGGCCCAAAGCTACGGGAGAATGATCTTGACATTCACAGATTATTCCACAACTATGTACCAAATCCTGTGCTGGTCATCATTGATGTCCAGCCTAAGGAGCTAGGGATACCTTCTAAGGCTTATTATGACGTTGAAGAAGTAAAGGAGAATGCCACGCAAAAGAGCCAAAAGGTTTTTGTTCACGTGCCTTCAGAAATTGCTGCTCATGAGGTTGAGGAAATTGGAGTAGAACACTTGTTGAGGGATGTTAAAGATACGACCATCAGTACACTTGCAACCGAGGTTTCTGGTAAACTTACTGCGCTGAAAGGATTAGATGCTAGATTAAAAGAGATACGGGGTTACCTTGATCTGGTTATTGATGGAAAGCTTCCATTGAACCATGAGATACTTTACCATCTGCAGGATGTGTTCAACCTCCTTCCTAATCTCAACGTGTCAGAGTTAATCAAGGCCTTTGCAGTGAAAACAAATGACATGATGCTGGTAATTTATCTTTCTTCTCTGATTCGAAGCGTCATTGCACTTCACAACTTGATTAATAATAAGATGCTGAACAAGGAGCATGAGAAAGCTGAAGATGCAAAGCCAGTTACAATCCCTGCTGTCAGTGGAAGCTGA 1167 0.4284 MRSIAVLYLHKQGLPGHKVIGDYFKVSILDLQYGALYSNTLFCLVLLEKIEIERGPTGRRKKRRRVSEGEGDKSDSFEMDVIKSQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHRLFHNYVPNPVLVIIDVQPKELGIPSKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRGYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVSELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDAKPVTIPAVSGS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1229 388 SMART pad1_6 94 228 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele44g1229 388 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 93 202 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele44g1229 388 CDD MPN_RPN7_8 93 373 IPR033858 GO:0005838
Lele44g1229 388 Pfam Maintenance of mitochondrial structure and function 252 363 IPR024969 -
Lele44g1229 388 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 91 371 - -
Lele44g1229 388 Gene3D Cytidine Deaminase, domain 2 87 272 - -
Lele44g1229 388 FunFam 26S proteasome non-ATPase regulatory subunit 7 87 272 - -
Lele44g1229 388 ProSiteProfiles MPN domain profile. 95 229 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1229 Lele-ChrLele44 20731871 20737059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1229 97 326 Eukaryotic Initiation Factors Gene Family AT2G39990 29.487 4.14e-26 104