Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1220 ATGGAGGAAGAAGATGTGAGGGTTGGAGCCAACAGGTATGGTGAAAGGCAACCGATAGGAACGGCGGCTCAGAGCCAAGATGGGAGAGACTACAGTGAGCCACCTGCTGCGCCATTGGTTGAAGTTGGTGAGTTATCTTCATGGTCTTTCTATAGAGCAGGCATTGCAGAGTTTGTGGCCTCTTTCTTGTTCCTCTACGTTACCGTTTTGACTGTCATTGGGGTGGCCAAATCTCCCTCTAAGTGCTCCACTGTTGGCACTCAAGGCATTGCTTGGGCTTTTGGTGGCATGATATTTGCTATTGTCTACTCCACTGCTGGTATCTCAGGAGGGCACATAAATCCAGCAGTAACATTTGGGCTGTTTCTGGCGAGAAAGGTGTCACTGACAAGGACATTCATGTACATAATAATGCAGTGCTTGGGCGCAATCGCCGGAGCCGCCATGGTTAAGGGCTTTCAACCACACACCTATGAGAGACTTGGCGGTGCTGCTAACACTCTCGCTTCTGGCTACTCTAAAAGCTCAGGCCTTGGAGCTGAGATCCTAGGCACATTTGTTCTTGTTTATACTGTCTTCTCTGCTACTGATGCCAAGCGAAATGCTAGAGACTCCCATGTTCCTGTATTGGCACCACTGCCTATAGGGTTTGCTGTGTTTTTGGTGCATTTGGCTACAATTCCTGTGACAGGCACAGGTATCAACCCAGCAAGAAGTCTTGGAGCAGCTCTGATCTTCAACAAGCACCAAGTTTGGCATGAACAGAGTGGATTTTCTGGGTTGGACCTCTCATAG 795 0.4893 MEEEDVRVGANRYGERQPIGTAAQSQDGRDYSEPPAAPLVEVGELSSWSFYRAGIAEFVASFLFLYVTVLTVIGVAKSPSKCSTVGTQGIAWAFGGMIFAIVYSTAGISGGHINPAVTFGLFLARKVSLTRTFMYIIMQCLGAIAGAAMVKGFQPHTYERLGGAANTLASGYSKSSGLGAEILGTFVLVYTVFSATDAKRNARDSHVPVLAPLPIGFAVFLVHLATIPVTGTGINPARSLGAALIFNKHQVWHEQSGFSGLDLS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1220 264 Gene3D Glycerol uptake facilitator protein. 37 259 IPR023271 -
Lele44g1220 264 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Lele44g1220 264 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele44g1220 264 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele44g1220 264 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele44g1220 264 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele44g1220 264 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele44g1220 264 TIGRFAM MIP: MIP family channel proteins 56 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele44g1220 264 CDD MIP 52 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele44g1220 264 SUPERFAMILY Aquaporin-like 45 250 IPR023271 -
Lele44g1220 264 Pfam Major intrinsic protein 44 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele44g1220 264 MobiDBLite consensus disorder prediction 1 31 - -
Lele44g1220 264 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 256 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1220 Lele-ChrLele44 20667143 20669133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1220 2 255 Major Intrinsic Protein MIP AT2G45960 78.346 4.28e-149 417