Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1214 ATGACCAAGAAGGCGAGGAATGCCAAGAAAGATCCCAACAAACCAAAAAGACCGCCCAGTGCTTTTTTTGTCTTCCTTGAGGAGTTCAGAAAGACCTTTAAGGAAGAAAATCCTAATGTGAAGGCTGTATCAGCTGTGGGGAAGGCTGGAGGACAGAAATGGAAATCTATGACTCCTGCTGAGAAAGCTCCATATGAAGACAAGGCTACAAAAAAGAAAGCTGAGTATGAAAAACTCATGAATGCATATAATAAAAAGCAGACAAACTCAGTCAACGAGAGAGATGAGGAATCGGATAAGTCCAAGTCTGAAGTGAATGATGAAGACGATGAAGCCAGTGCAGAGGAAGCACACCAAGAAGAGGAGGACGAAGAGGAGGACGACGAAGGCGAGGATGACGAAGATGATGACTGA 414 0.442 MTKKARNAKKDPNKPKRPPSAFFVFLEEFRKTFKEENPNVKAVSAVGKAGGQKWKSMTPAEKAPYEDKATKKKAEYEKLMNAYNKKQTNSVNERDEESDKSKSEVNDEDDEASAEEAHQEEEDEEEDDEGEDDEDDD 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1214 137 MobiDBLite consensus disorder prediction 60 80 - -
Lele44g1214 137 CDD HMG-box 15 80 - -
Lele44g1214 137 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 120 IPR031061 -
Lele44g1214 137 Coils Coil 66 86 - -
Lele44g1214 137 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 15 84 IPR009071 -
Lele44g1214 137 MobiDBLite consensus disorder prediction 108 137 - -
Lele44g1214 137 Pfam HMG (high mobility group) box 15 84 IPR009071 -
Lele44g1214 137 Gene3D High mobility group box domain 1 99 IPR036910 -
Lele44g1214 137 SMART hmgende2 14 85 IPR009071 -
Lele44g1214 137 MobiDBLite consensus disorder prediction 89 107 - -
Lele44g1214 137 MobiDBLite consensus disorder prediction 46 137 - -
Lele44g1214 137 SUPERFAMILY HMG-box 8 88 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1214 Lele-ChrLele44 20620127 20621627 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele44g1214 HMG_box 2.9e-24 CL0114