Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1212 ATGAAACTGACAAGGTAAAGACGAAGAAAACAAATGCCGAGGAGGTCTTTCAGGGATTCCCTTAAAGCTCTTGAAGCTGATATTCACTTCGCCAATGCCCTAGCTTCTGATTACCCGAGCGACTTCGATGGTGCCTGCCTCCAAATGAGATTATCATACAGTTCAGCTGCTCAGTTTTTCCTGATACTGTTTAAGTGGACCGATTGCCACCTTGCTGGAGCCTTTGGCTTGCTTAGAATTCTTATATACAAGGCATATGACAATGGGAAGACAACAATGAAAGTTTATGAAAGAAAAGCAAGTCTGAAGGAGTTCTATGGTGTAATCTTTCCCTCTTTATTGCAACTACAAAGAGGAATAACTGATGCTGAAGACAGACAACAGAAAGATTTATGTGCTACTAAGTATAAGTCAGAAGATGCAACCAACAAAAGAAAGATTTCTGATATTGACTTAGAGAGAGAAAATGAATGTGACATTTGCATGGAGATGAACAGCAGGGTTGTGTTACCTATGTGCAGCCACACGATGTGCATAAAATGTTACCAAGACTGGCGTGAGCGATCTCAATCTTGCCCGTTCTGTCGGGGAAATCTGACAAGAGTTAACTCAGGTGACCTGTGGATGTACATGAGCAGCAATGAGATAGATGACTTGGATTCAATCATAAAGGAGAATGTAAATAGGCTATTTATGTACATTGAGAAGTTGCCTCGTTTAGTTCCAGATCCTATTTTCGCATATTATCCTCAGCATTGTTGA 762 0.4068 MKLTRXRRRKQMPRRSFRDSLKALEADIHFANALASDYPSDFDGACLQMRLSYSSAAQFFLILFKWTDCHLAGAFGLLRILIYKAYDNGKTTMKVYERKASLKEFYGVIFPSLLQLQRGITDAEDRQQKDLCATKYKSEDATNKRKISDIDLERENECDICMEMNSRVVLPMCSHTMCIKCYQDWRERSQSCPFCRGNLTRVNSGDLWMYMSSNEIDDLDSIIKENVNRLFMYIEKLPRLVPDPIFAYYPQHC 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1212 253 SUPERFAMILY RING/U-box 142 201 - -
Lele44g1212 253 SMART ring_2 158 195 IPR001841 -
Lele44g1212 253 PANTHER RING FINGER PROTEIN 41, 151 15 248 - -
Lele44g1212 253 FunFam RING/U-box superfamily protein 139 205 - -
Lele44g1212 253 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Lele44g1212 253 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Lele44g1212 253 Pfam Zinc finger, C3HC4 type (RING finger) 155 201 - -
Lele44g1212 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1212 Lele-ChrLele44 20611651 20614830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1212 106 197 C3H Transcription Factor Family AT5G01960 31.373 3.69e-06 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g1204 38 23027246 23032568 Lele44g1212 44 20611651 20614830 CCT
Lele39g0101 39 681991 698553 Lele44g1212 44 20611651 20614830 CCT
Lele40g1145 40 21518048 21522076 Lele44g1212 44 20611651 20614830 CCT
Lele44g1212 44 20611651 20614830 Lele44g1212 44 20611651 20614830 ECH
Lele42g0139 42 1107207 1115105 Lele44g1212 44 20611651 20614830 hybridization