Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1202 ATGGAAATGGCTTCTAGTCCGCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCCGGTGTTGTTCGTGCTTTGACTCAAGATGTGGATGAATTTTACGGACTCTGTGATCCAGAAAAGGAGAATTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCCCCGGAGCTTCCTGAGCCAGCTCTTGGGATCAATTTTGCTAGGGATGGCATGATTCGCAAGGACTGGCTTTCTCTTGTCGCTGTTCACAGTGATTCATGGCTGCTTTCTGTGGCATTTTATCTTGGAGCCCGTCTCAACCGCAATGAAAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGGCTATAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCCAGGGGAAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAATCCGAAGTTTGCAGATGAAGGTTATGAGGAGGATGAAGATGAGCATAGCGAAACCCTTTGCGGTAGCTGTGGTGGAAATTACAATGCAGACGAATTTTGGATCGGCTGCGATGTCTGTGAGAGGTGGTTCCACGGGAAATGTGTGAAGATTACCCCTGCCAAGGCTGAGAGCATAAAGCAATACAAATGTCCATCCTGCATGAGGAGGGGCAAGCCCTAG 717 0.477 MEMASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYGLCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMIRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKAIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMRRGKP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1202 238 SMART PHD_3 185 233 IPR001965 -
Lele44g1202 238 MobiDBLite consensus disorder prediction 148 165 - -
Lele44g1202 238 MobiDBLite consensus disorder prediction 141 176 - -
Lele44g1202 238 Pfam PHD-finger 186 234 IPR019787 -
Lele44g1202 238 FunFam PHD finger alfin-like protein 178 234 - -
Lele44g1202 238 CDD PHD_AL_plant 185 235 IPR044104 -
Lele44g1202 238 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Lele44g1202 238 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Lele44g1202 238 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Lele44g1202 238 SUPERFAMILY FYVE/PHD zinc finger 174 236 IPR011011 -
Lele44g1202 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
Lele44g1202 238 PANTHER CPG BINDING PROTEIN 6 234 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1202 Lele-ChrLele44 20543079 20545883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1202 4 232 Alfin-like Transcription Factor Family AT5G05610 80.000 7.88e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele44g1202 Alfin 2.8e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0150 41 1143856 1146481 Lele44g1202 44 20543079 20545883 hybridization
Lele42g0149 42 1182121 1184891 Lele44g1202 44 20543079 20545883 hybridization