Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1179 ATGATGGAAGCAAGAAAGGAAGGCTCGGAATGCTCCAAGACAAGCCCTTCTAGTTATAATAATTGCAAAGAATTATTAGAAGAAGCGTGCGAGAGCGAGAGCAAGACCAATGAAGAGGAAGAGGAAGAGAAAGGTAAGAAGAATATGAATAATACTGGAGGAAGCTCAAGCAATAGCACAGTGGAAGAGACGACGACAGAGAAGAAGCCGTCAGTGAGGCCTTACGTGAGATCCAAGATGCCGAGGCTCCGATGGACTCCTGATCTTCACCTTCGCTTTGTTCATGCCGTTCAAAGGCTTGGAGAAGAGAGAGCAACACCAAAGTTGGTTCTCCAATTAATGAACATCAAAGGCTTGAGTATTGCGCATGTTAAGAGTCATCTTCAGATGTATAGGAGCAAGAAGGTAGAGGATCCAAGCCAAGTAATGGCTGATCATCATAGGCACCTTGTAGAAAGTGGAGACAGAAATATCTACAATCTCAGCCAAATTCCCATGCTTCAAGGTTATAATAATCCCTGCCAAACTTCAACCTTCAGATATGGATATGGGGATAATGCTTCTTTGGGTGTGTATGAAAAAATGGTTCGTAGCCCTTTCATGGGTCGGAGTCTGATTGATCACCATGAATCCGGGTCGTCTGGGTTTCACAACATTTTCCATGTGGACCCTTCAAACTTTCTGAAGCAATCATCATCATCATCAACAAATAGTAAAGATCATCAAGTTCTCTCATTTGGTAGCTATCATCACGATCCCATGTACAACGGAACCAGATTGAGCCACCAGCATAACACTGATCTTAACTCATTCATGACCCATATAGGACCAACAAGATCAGAAGAACGGTTTCTTCCTATTATGAAGGATCATCATCAGGACCAAACAAAGACGACGCTGAAAAGAAAGGCTTGTGAAGATCAAATGGATCATCATCTTCTTCATCATAATCACCACCTCGATTTGGATCTATCACTCAAGTTAAATTCAAGGGTTGATACTGATAGGGCACACCAGAAGAATCATTTGAAGGAGAATGATCATGAAGTTGATAGCAATCTCTCATTGTCTTTGTATTCTCAAATTTCTTCGTTTTCTAATATAAATAATAATAATAATGCTAGAAACAGCTCCAAGGAAGGAGAACACAGTGATGATAAGGAGAAATCAAGGAGGGAAAGGGCTAGTACACTGGATCTGACTATATGA 1209 0.4119 MMEARKEGSECSKTSPSSYNNCKELLEEACESESKTNEEEEEEKGKKNMNNTGGSSSNSTVEETTTEKKPSVRPYVRSKMPRLRWTPDLHLRFVHAVQRLGEERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVEDPSQVMADHHRHLVESGDRNIYNLSQIPMLQGYNNPCQTSTFRYGYGDNASLGVYEKMVRSPFMGRSLIDHHESGSSGFHNIFHVDPSNFLKQSSSSSTNSKDHQVLSFGSYHHDPMYNGTRLSHQHNTDLNSFMTHIGPTRSEERFLPIMKDHHQDQTKTTLKRKACEDQMDHHLLHHNHHLDLDLSLKLNSRVDTDRAHQKNHLKENDHEVDSNLSLSLYSQISSFSNINNNNNARNSSKEGEHSDDKEKSRRERASTLDLTI 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1179 402 MobiDBLite consensus disorder prediction 366 402 - -
Lele44g1179 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 81 135 IPR006447 GO:0003677
Lele44g1179 402 MobiDBLite consensus disorder prediction 378 402 - -
Lele44g1179 402 MobiDBLite consensus disorder prediction 49 65 - -
Lele44g1179 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 136 IPR017930 -
Lele44g1179 402 Gene3D - 77 137 - -
Lele44g1179 402 MobiDBLite consensus disorder prediction 28 73 - -
Lele44g1179 402 FunFam Two-component response regulator 76 137 - -
Lele44g1179 402 Pfam Myb-like DNA-binding domain 83 132 IPR001005 -
Lele44g1179 402 SUPERFAMILY Homeodomain-like 79 134 IPR009057 -
Lele44g1179 402 Coils Coil 23 43 - -
Lele44g1179 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 55 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1179 Lele-ChrLele44 20327781 20329498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1179 72 165 G2-like Transcription Factor Family AT2G42660 57.798 1.65e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele44g1179 Myb_DNA-binding 1e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g1179 44 20327781 20329498 Lele44g1179 44 20327781 20329498 ECH
Lele41g0170 41 1355721 1357368 Lele44g1179 44 20327781 20329498 hybridization
Lele42g0172 42 1408048 1409748 Lele44g1179 44 20327781 20329498 hybridization