Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1171 ATGAGATCAATAATGGCGGAATTGCAGAAAAGCTTCAGAGCTTCTGTGTTAAGTGAGAGTGTTCTTCTCTTAGTATTACTATTATTATGCCTTCACATCACAGCAAGACCTTCCACGGCGGCGGCCACACCTGTACCAGTACCAGTAGGAGTCATTCTGGATCTGAATTCCACACTTGGTTTAATGGTTAACCACAGCCTCGCCTTCGCCGTCGAAGATTACTATAGCAAGCATGAGAATACAGCCACCAAGATCAACCTTATAGTCCGGAATGTTCCTCTGAACGATGTCATTGCTGCCGCAGAAAATGCTTCTGATCTAATAGAGAAAGACAAGGTGCGTGCCATATTGGGGCCCCGAAATTCAGAACAAGCAAGGTATATCGTTCAACTTGGTGAGAAACGCCAAGTACCAGTTATTTGGTTTCCCATGACTGGTCCTTCTCTTTTGCCACCCCCTTCCCCATCCTTCCTTTACTCCGATCAAGGCCTTCATTGCTCTCAGTTCCATGCTATAGCTGACACTATTAAAGCACTTGGGTGGCAATCAATCATCCCCATTTATGAACAGACCGAATATGGCAGTTACCTTATTCCATGCCTCACCAATGTCTTTAAATATATGGGCATACGAATGGTTAACGTAACTGCCATTGATTCTAATTCAAATAGATCTGAAATTTACTCCATTCTTGCCAAGTTAAACAACATGCGAAGACATGTATTTCTTGTCCATATGAGCATGGATCTCGGAACAAAATTTATTCGGTCTGCACAATCCAGAAAAATGATGGATGAAGGATATGCTTGGATACTTACCCAAGAGCTATCTACTTTGACAAATCCTAGAGTGCCGATTGTGAGAATATCGCATAATGGCCAAGACCGATCTTCGACATATCCCACGAATTTTTTTAGAGATGCAGTTCCTTTGAAAGGATACATGCAAGGTGCATTGGTAGTGAGGCCAATGGATTTGGTTTCCAAAAGCGAAAGAACTTGGCGTAACTATAAAGAGAGAATTTTCCTGCGTAAGTTCAATTTCGAAAGTAGCCTAACAATCTATGGGTGGTGGGCTTATTACACAATCGAAGCATTGGCTGGGGCACTAAAGAACACAGGCGCAGAAAATGGCGCAAAACTTCGCCGTGAAATTTGGTCTACTAGTTTCATAGGCGACTCAGGGATAAATTTTACTTTAGTTAATGGACAACTAGACCAATCGGAGTATGAAGTATACAATGTGATCGGACAAAGAGAAAGGATCATCGGAAATTGGAGCCCTAAAACTAGACTTGTTAAAAATCTTAGTGAAGGTCGTGAGACATCTGGTGAATACCCACTAAAGTATCCACTGTGGCCGGGTGACACATTGGATAAACCACCAAAGTTGAGAATTGGAGTCCCAAGAACAAATTCTTCTCCTAAATTTGTCAATGTAGATTTCTATAATTCTAGTAAGCCGCTGATATATGGCTTTGCTATTAATGTGTTCTTAAAAGCTCTCGATGTTCTGCCATTTCCGTTCAATTATTATGACTTTGTTCCTTTGCCGAACGTAAGTAGAAGCGATCCCATGACATATGACGATATTCTCTGCCGCCAAATGGAAGTCGAGGATCTTGATGCTATAATTGGAGACATCACAGTTGTGGCAAATCGCACAAAATGTGTTGATTTCACGTTGCCGTATTTAGATTCAAGTGTAGCAATGGTGGTACATGTGAAGAAGGCCTCCAGAAGTAAGGGAATCCTCTTGAAACCATTCGATAGGTCACTATGGTTAATTCTTGGTGCGAATTTTGCGGCTGCAACAATTATCATAATTATATTAGAAAGAAACAAAGCCAGCCAAACCAAGCAAACCAACGAAAGAAACAAAACCAACGAATTTCTATTCAACCCCTTCCTTGTTTACAAGATCGATGTTATAGAGGAGTTTGAAAGCGGAGCTGCAAAATGGATGGTGATACTGACGCCATTCCTATTCATCTTGGTGGTTCAAGTTTACACTGCGAATTTAACATCAATTTTAACACAAGAACAAATCAAAAAGCCTTTATTTAAGGACGAAAATGAGACTAAAAGTAGCAACGTGTCCGTGGGATATCGAAAAGGTTCATGGGTGGAAGGGTTTCTGATTGAACAAATAGGCTTCAACTCGTCTCGGTTGAAGCCTTTAGCAAGTCACGAAGAGTACAATTCAGCATTGTCAAATGGAACAGTGGGTGCTATTTTTGATGAAACTCCTTATCTCACGCTTTTCCTCTCCAAATATAAGTCTCACTTTATAATGACAGCACCAATGTACAAAACTGGTGGATTTGCCTTTGGTGCTTTTTAG 2343 0.4097 MRSIMAELQKSFRASVLSESVLLLVLLLLCLHITARPSTAAATPVPVPVGVILDLNSTLGLMVNHSLAFAVEDYYSKHENTATKINLIVRNVPLNDVIAAAENASDLIEKDKVRAILGPRNSEQARYIVQLGEKRQVPVIWFPMTGPSLLPPPSPSFLYSDQGLHCSQFHAIADTIKALGWQSIIPIYEQTEYGSYLIPCLTNVFKYMGIRMVNVTAIDSNSNRSEIYSILAKLNNMRRHVFLVHMSMDLGTKFIRSAQSRKMMDEGYAWILTQELSTLTNPRVPIVRISHNGQDRSSTYPTNFFRDAVPLKGYMQGALVVRPMDLVSKSERTWRNYKERIFLRKFNFESSLTIYGWWAYYTIEALAGALKNTGAENGAKLRREIWSTSFIGDSGINFTLVNGQLDQSEYEVYNVIGQRERIIGNWSPKTRLVKNLSEGRETSGEYPLKYPLWPGDTLDKPPKLRIGVPRTNSSPKFVNVDFYNSSKPLIYGFAINVFLKALDVLPFPFNYYDFVPLPNVSRSDPMTYDDILCRQMEVEDLDAIIGDITVVANRTKCVDFTLPYLDSSVAMVVHVKKASRSKGILLKPFDRSLWLILGANFAAATIIIIILERNKASQTKQTNERNKTNEFLFNPFLVYKIDVIEEFESGAAKWMVILTPFLFILVVQVYTANLTSILTQEQIKKPLFKDENETKSSNVSVGYRKGSWVEGFLIEQIGFNSSRLKPLASHEEYNSALSNGTVGAIFDETPYLTLFLSKYKSHFIMTAPMYKTGGFAFGAF 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1171 780 SMART GluR_14 465 779 IPR001320 GO:0015276|GO:0016020
Lele44g1171 780 Pfam Receptor family ligand binding region 64 417 IPR001828 -
Lele44g1171 780 Gene3D - 460 585 - -
Lele44g1171 780 Gene3D - 586 708 - -
Lele44g1171 780 Pfam Bacterial extracellular solute-binding proteins, family 3 538 766 IPR001638 -
Lele44g1171 780 Gene3D - 35 169 - -
Lele44g1171 780 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 48 777 - -
Lele44g1171 780 SUPERFAMILY Periplasmic binding protein-like I 44 427 IPR028082 -
Lele44g1171 780 Gene3D - 170 348 - -
Lele44g1171 780 Pfam Ligand-gated ion channel 592 687 IPR001320 GO:0015276|GO:0016020
Lele44g1171 780 SUPERFAMILY Periplasmic binding protein-like II 460 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1171 Lele-ChrLele44 20262891 20267654 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1171 26 777 Ion Channels AT2G29120 30.662 1.78e-107 349