Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1170 ATGCAGAAAAGGCGAAGAGATTGCCTCATATTTGTGGGCATAGTATGCCTAATTCCCTTAACTGCGTCTGCAGCTGTAGATATACCAGTAGGAGTGATGCTGGATTTGGATTCATCACTTGGCTCCACGGCTCACGACTGTATCAACATCTCACTCGAAGATTTCTATTCCACAAATGATAACTATGAAACCAAGCTCCAACTTCATTTCAATGATTCTGGAAACGATCTCCTCACTGCAGCTTCTGCAGCTCGGGATCTAATAAATAACAAAAAGGTGCATGCGATCGTGGGACCTCAAAACTCTGAGCAAGCAGGGTATGTTGTAGAACTTGGTAACAACTCTGATGTACCTGTGATCTGGTTTTCTCCATCTGGTCCTTCTCTTTTGCCACCTCGTTCCCGATTCTTCATCGACTCCAACTCCACCAGAAGCCATTGCTCTCAGTTCGAAGCTATAGCAGCCATTATAGAAGCTTATCACTGGCAGTCTGTGATCCCCATTTATGAATCTCCAGAATTCGGCAATGACCTAATTCCTTGTCTCACTAATGCCTTGCAAGACATGGACACTCGAGTGCCTTACATAAGTGCCATTCGTCAAGATTCCACGGATGATCAAATCAAAGCTGAGGTTGAAAAGATAAAAGGCAACCGAACATATGTGTTTGTTGCCCATATGACTGTGGAGCTTTGGTCAAGACTTGGTGAACAAGCACAAAAGGCAGGGATGATGGGTGAAGGATACGCTTGGATACTTACACAAGGCCTATCTTCTGTGGTAGATTCTGAAGCTAAAGGCTACATGGAAGGTGCTTTGGGTGTGAGGCCATCTTTGGTTGTTTCCAACATAAATAAAAGTAAGCGCGATTCCTTAGCGACAACATTAAAGTCAGATAAAACTCTATCTCTATATGGCCTGTGGGCTTATGACACTATCACAGCATTGGCCAAGGCGGTAGAGAATGCCGGCTTAGTCAATTATAATGAAAGCAGAGTTGATCTTCGCAACGAAACAGGCCCAGAACTTGGCAGAGAAATTCAAGATACTGATTTCGAAGGCCTGTCGGGTGATTTCAGTTTGAGGCAAGGACAACTAGAACCATCACAATTTGAAGTATACAATGTGAAGGGGAAAAGAGAAACGATCATTGGATATTGGAGCCCCAAAACAGGACTTGTTCAAATTGACAGTGTAAAAGTTGAATGGCCGGGTAACGCAACGAAGATACCACTAAAGTTGAAAATTGGGGTCCCAAAAACGCATTTCACTGAATTTGTTACTGTTACTGGAGAAGGGTACGATAAATCAGATGTTGGAGGCTTTGCTGCTGATGTATTTAAAAAAGTGGTTGATGTTTTGCCATTTAATTTAACGTATGAGTTTGTGCCCGTGAACATTAGTGGAGAGAAGATTCCCTCGAGCTATGATGCTCTTCTCTGCCATATAAAAAACACGAATGTTGATGTTGATGTTATAATTGGAGACATTACAGTTGTAGCGAATCGCACAGATTGTGTTGATTTCACAATGCCGTATTTAGATTCAAGCGTGTCAATGGTGGTGAAGGTGAGGTCCGAGTCCACAAATAAATGGATCCTCTTCGAACCTTTTGATAAGAATCTTTGGTTAATTCTTGGTGCGATTTTTGTGGGTGCAACTCTTACTGTAATTATCTTGGAAAGAAAAACGAAGGATAGCAAATTCAAACACTTTGTCCGTAATCCGTTCCTTATTTACAAGAGTGATGTAGATCAGGATTTGAAAAGACGCACGTCTAAATGGGTGGTGATAGTGGTCATGTTTCTGTTGAGCATAGCAGTGCAAGTTTACACTGCAAATTTGACATCAATTTTAACAGAGAGGACAACGGCCAAGCCTTCTCCATGGAGAGACTTGCAAGAGATTAAAAGGAGCAACAAGTCAGTGGGACATCAAAGCGATTCCTGGGTGAGAGACTTTCTGATTCACCAAATAGGATTCAAGGATGATAAGCTAAAGCCTTATAAAAGTATTGGCGAGTACATGGATGCATTATTCAATAAAGTCAAAGAAAAACGAGTGGATGCTATTTTTGACGAAACTCCTTATCTCATGTTCTTGCTTAAGAAATGCCCTTCTTGCAAGATGACAGGACCATTCTACAAAACTGGTGGATTTGCCTTCGCATTCCCAAATAATTCTTCCTTGGTCTCGAGTTTTTCAACTGCAATATTGAATGTGACTCAAGATGGTGGACGAAGAAGAAGAATCTCCCCTGTAGCCATACCAGTAGGAGTGATGCTGGATTTGGATTCATCACTGGGTTCCACGGCTCTCAACTGTATCAATATCGCACTCCAAGATTTCTATTCCACACATGACACCTATGAAACCAAGCTCCAACTTCATTTCAATGATTCTGGAAACGATCTCCTCACTGAAGCTTCTGCAGGAGTAAAAAGGTGCATGCAGTCGTGGGACCTCAAAAATCAGAGCGAGCAAGGAATGTTGTTGAACTTGGTTACAAGTATGATGTCCTGTGACTTGTCTTGTCCATCTGGCCATTCCCTGTTGCCACCTCGTTCCCGATTCTTGATCAACTCCAACTCCACTGGAAGCCATTGCTTTCAAATTCGCAACGACCTAATTCCATGTCTCACTAATGCCTTGCAAGACATGGACACTCGAGTGCCTTACATAAGTCCCATGAGTCAAGATTCCACGGATGATCAAATCAAAGCTGAGCTTAAAAAGATAAAAGGCAACGGAACTTATGTGTTTGTTGCCCATATGACCGTGGAGCTTTGGTCAAGACTTGGGGAACAAGCACAAAAGGAAGGGATGATGGGTGAAGGATACGCTTGTATACTTACACAAGGCCTATCTTCTGTGGTAGATTCCGAAGCTAAAGGCTACATGGAAGGTGCTTTGGGTGTGACGCCATATTTGGTTGTTTCCAATATAAGTAAAAGTAAGCGCGATTCCTTAGCGACAACATTAATGTCAAAGTACGATAAAACTCTGTCTCTATATGGCCTGTGGGGTTATGACACTATCACAACATTGGCCAAAGCGGTAGAGAATGCCGGCTTATTCAATGATACTCTCAGATATAGGAATGAAACAGGCCACGAACTTTACAGAGCAATTTTGGATACTGATATCGAAGGCCTGTCAGGGAATTTCTGTTTGAGGGAAGGGCAACTAGAACCATCAAAAGTTGTAGTATACAATGTGGAAGACAAAAAGAGAAAGGATCATTGGATATTGGAAATCAGAAAGAGGATTTTATCAGAATTATCAAAATCACAGTGTGCTTGA 3303 0.4208 MQKRRRDCLIFVGIVCLIPLTASAAVDIPVGVMLDLDSSLGSTAHDCINISLEDFYSTNDNYETKLQLHFNDSGNDLLTAASAARDLINNKKVHAIVGPQNSEQAGYVVELGNNSDVPVIWFSPSGPSLLPPRSRFFIDSNSTRSHCSQFEAIAAIIEAYHWQSVIPIYESPEFGNDLIPCLTNALQDMDTRVPYISAIRQDSTDDQIKAEVEKIKGNRTYVFVAHMTVELWSRLGEQAQKAGMMGEGYAWILTQGLSSVVDSEAKGYMEGALGVRPSLVVSNINKSKRDSLATTLKSDKTLSLYGLWAYDTITALAKAVENAGLVNYNESRVDLRNETGPELGREIQDTDFEGLSGDFSLRQGQLEPSQFEVYNVKGKRETIIGYWSPKTGLVQIDSVKVEWPGNATKIPLKLKIGVPKTHFTEFVTVTGEGYDKSDVGGFAADVFKKVVDVLPFNLTYEFVPVNISGEKIPSSYDALLCHIKNTNVDVDVIIGDITVVANRTDCVDFTMPYLDSSVSMVVKVRSESTNKWILFEPFDKNLWLILGAIFVGATLTVIILERKTKDSKFKHFVRNPFLIYKSDVDQDLKRRTSKWVVIVVMFLLSIAVQVYTANLTSILTERTTAKPSPWRDLQEIKRSNKSVGHQSDSWVRDFLIHQIGFKDDKLKPYKSIGEYMDALFNKVKEKRVDAIFDETPYLMFLLKKCPSCKMTGPFYKTGGFAFAFPNNSSLVSSFSTAILNVTQDGGRRRRISPVAIPVGVMLDLDSSLGSTALNCINIALQDFYSTHDTYETKLQLHFNDSGNDLLTEASAGVKRCMQSWDLKNQSEQGMLLNLVTSMMSCDLSCPSGHSLLPPRSRFLINSNSTGSHCFQIRNDLIPCLTNALQDMDTRVPYISPMSQDSTDDQIKAELKKIKGNGTYVFVAHMTVELWSRLGEQAQKEGMMGEGYACILTQGLSSVVDSEAKGYMEGALGVTPYLVVSNISKSKRDSLATTLMSKYDKTLSLYGLWGYDTITTLAKAVENAGLFNDTLRYRNETGHELYRAILDTDIEGLSGNFCLREGQLEPSKVVVYNVEDKKRKDHWILEIRKRILSELSKSQCA 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1170 1100 Pfam Bacterial extracellular solute-binding proteins, family 3 436 745 IPR001638 -
Lele44g1170 1100 SUPERFAMILY Periplasmic binding protein-like I 756 1077 IPR028082 -
Lele44g1170 1100 SUPERFAMILY Periplasmic binding protein-like II 413 745 - -
Lele44g1170 1100 SUPERFAMILY Periplasmic binding protein-like I 22 405 IPR028082 -
Lele44g1170 1100 Gene3D - 411 531 - -
Lele44g1170 1100 Gene3D - 532 655 - -
Lele44g1170 1100 Gene3D - 656 750 - -
Lele44g1170 1100 PANTHER OS06G0188250 PROTEIN 735 814 - -
Lele44g1170 1100 Pfam Receptor family ligand binding region 49 378 IPR001828 -
Lele44g1170 1100 Pfam Receptor family ligand binding region 883 1074 IPR001828 -
Lele44g1170 1100 Gene3D - 146 317 - -
Lele44g1170 1100 Gene3D - 866 1013 - -
Lele44g1170 1100 SMART GluR_14 415 753 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1170 Lele-ChrLele44 20248306 20256322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1170 11 743 Ion Channels AT2G29120 35.013 7.66e-129 415