Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1165 ATGTCAATAAAAGCACAACAATCTTATCTTGTGGGCGAGAGATGGGTACAAAGGTTGAAGGCAGGCATTGAGGAGATTGCCCTTTCGCCCAACTTGAACAGTTTGTTTCTTGGTTCCCACGTCAAAGATGACGTTAGTAATGACATCTCTTCAAACATATCTCTGTTTTCTTCTTGTCCTGGTATGATTATCAATTTTGAGAATTCTAAACTGAGTTGTTTTATGGGTGGTGACTGTAGGAACAATACATCGCGTAAGAGAAGAAGAAGCGGGAGTGTCACTGTGATAGACACTCTTGAGAAGTGGAAGAAGTACAACAGTGAGTCTGAGTTTGTCAAAAATGGTGGAGCAAATAAAGCGATGAGTCACAGAGTTCCAGCAAAAGGCTCGAGAAAGGGGTGCATGCGAGGCAAAGGTGGGCCTCAAAACTCAGATTGCAACTACAGAGGAGTGAGACAGAGGATTTGGGGCAAATGGGTGGCAGAAATTCGTGAACCCATTACTAGAAATCACAGTAATGTGGCAAACAAGAAACCGAATCGCTTATGGCTCGGCACTTTCTCTACTGCTCTTGAAGCTGCTCTTGCTTATGATGAAGCAGCCAGAGCCATGTATGGTCCCTGTGCTCGCCTGAACTTTCCTGATTATAATATGGAAGGAGGAGGAGGAGGAGAAGAACCCACAAGCTCTAATGATGAAACAGAGAAGAAACATGAGGTTGTTCTGGTGAAGACAGAGGAAGAAACAGAGGAGGACTCTGGTGTCATTGGAAGTGAAGGTTCCTTTGGGAAGAAGCATATGGAAGAAATGACTTCTGAGATTCTACGATTTTGTACATCTGATCACTCCCAAAATGAGGAATATAGATCTTCTATAGAGAGGAAATTTGAAGATGAGGAGGGTTTGAACAATTCTAGTTCTAGTAATGGAAACTCCATGTTTGAAGAAAAAGAAAGTGATGAGTGGCAGAGTGATCATTTGACTGAGTATCTGAATAACATGAAGGAGGCAGACTTGGAAGTGGGTTATTATGACTACAGTTTCTTGAGACCTGATTATGACTTTGGCTTATGGGAAGAGAAAAACTTACTTGGTATATGGTTTCCACACATGACTTCTTAG 1122 0.4216 MSIKAQQSYLVGERWVQRLKAGIEEIALSPNLNSLFLGSHVKDDVSNDISSNISLFSSCPGMIINFENSKLSCFMGGDCRNNTSRKRRRSGSVTVIDTLEKWKKYNSESEFVKNGGANKAMSHRVPAKGSRKGCMRGKGGPQNSDCNYRGVRQRIWGKWVAEIREPITRNHSNVANKKPNRLWLGTFSTALEAALAYDEAARAMYGPCARLNFPDYNMEGGGGGEEPTSSNDETEKKHEVVLVKTEEETEEDSGVIGSEGSFGKKHMEEMTSEILRFCTSDHSQNEEYRSSIERKFEDEEGLNNSSSSNGNSMFEEKESDEWQSDHLTEYLNNMKEADLEVGYYDYSFLRPDYDFGLWEEKNLLGIWFPHMTS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1165 373 SUPERFAMILY DNA-binding domain 147 215 IPR016177 GO:0003677
Lele44g1165 373 MobiDBLite consensus disorder prediction 219 238 - -
Lele44g1165 373 FunFam Ethylene-responsive transcription factor 2 146 215 - -
Lele44g1165 373 Pfam AP2 domain 146 206 IPR001471 GO:0003700|GO:0006355
Lele44g1165 373 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 81 336 - -
Lele44g1165 373 MobiDBLite consensus disorder prediction 288 321 - -
Lele44g1165 373 MobiDBLite consensus disorder prediction 119 142 - -
Lele44g1165 373 Gene3D AP2/ERF domain 147 215 IPR036955 GO:0003700|GO:0006355
Lele44g1165 373 ProSiteProfiles AP2/ERF domain profile. 147 214 IPR001471 GO:0003700|GO:0006355
Lele44g1165 373 SMART rav1_2 147 220 IPR001471 GO:0003700|GO:0006355
Lele44g1165 373 CDD AP2 146 215 IPR001471 GO:0003700|GO:0006355
Lele44g1165 373 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700|GO:0006355
Lele44g1165 373 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1165 Lele-ChrLele44 20200756 20204748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1165 83 280 AP2-EREBP Transcription Factor Family AT2G40340 44.500 2.47e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele44g1165 AP2 3.6e-13 CL0081