Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1163 ATGGCTATTGGGTCCTGTGCCCCTTCATTCTACCTCCTTCTCCTCTTTATATTTCATGAGAGATCAAAAAGAGAAACATTCTGCACCATGAATGTGGATTTAAATGGTGCCATAGACAGACATCTGGGCATCCGTTGGGGAGAGACAATGAAGCAAGTGATAGGAACGGTGGTGTCAAACAAGATGCAGAAATCAGTGATGGTGGCAGTGGATAGGTTATTCCACCACAAAGTATACAACCGTTATATTAAACGTACCTCTAAATTTATGGCACATGACGAGAACAATGTTTGTAACACCGGTGATCGAGTTCGACTTGATCCTTCTAGGCCTTTGAGCAAGCATAAGCATTGGATTGTTGCTGAAATTATTAAGAAAGCAAGAATTTATGCACCACCATCTTCACCAGTGACTAAAGAGCCAAGCTGCAGCTCTGAACCATCTGCTTCCTAG 453 0.426 MAIGSCAPSFYLLLLFIFHERSKRETFCTMNVDLNGAIDRHLGIRWGETMKQVIGTVVSNKMQKSVMVAVDRLFHHKVYNRYIKRTSKFMAHDENNVCNTGDRVRLDPSRPLSKHKHWIVAEIIKKARIYAPPSSPVTKEPSCSSEPSAS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1163 150 Gene3D - 49 142 IPR012340 -
Lele44g1163 150 Hamap 30S ribosomal protein S17 [rpsQ]. 50 125 IPR019984 GO:0003735|GO:0005840|GO:0006412
Lele44g1163 150 PRINTS Ribosomal protein S17 family signature 101 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele44g1163 150 PRINTS Ribosomal protein S17 family signature 69 92 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele44g1163 150 PRINTS Ribosomal protein S17 family signature 111 118 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele44g1163 150 FunFam 30S ribosomal protein S17 50 149 - -
Lele44g1163 150 TIGRFAM uS17_bact: ribosomal protein uS17 51 120 IPR019984 GO:0003735|GO:0005840|GO:0006412
Lele44g1163 150 SUPERFAMILY Nucleic acid-binding proteins 50 138 IPR012340 -
Lele44g1163 150 Pfam Ribosomal protein S17 55 122 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele44g1163 150 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 49 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1163 Lele-ChrLele44 20185086 20186222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1163 55 124 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 40.845 3.67e-06 42.7