Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1157 ATGGAAGACCCTGTAACAGAAGGCGAAGTTAGGCTTCCTCCATTGAATATCGGGGCAGAAGAAAAAGTAGAAAGGAAATCTGGGTTTCACTCTAATCAAGAAACCCAAGAGGAAAGAGAAGAAGGTAAAGGCAGTGGTGGCCTTATTAGGAGCTTGATGTCCACCATGGCCACTCCTACGGGGACGAGATCAGGGGAAGGTGAAACAGAGAACGACACCAGAAACGAGATTCCCAAGAAGGAAGTTGAAGAAGGAGGAGGGATCTTGAATAATATAATTTCCAATTTGTTTCATCAAAATGATGATGAAAGAGGTCAGAAAACGGAAGGTGATGAAGAGAAGAACAAGCAAGTGAAAACAGTGGAGGAGGAAAAAAATGGCGGCGTCATTGAAAACATGGTCTCCCACCTGCCTCCTTCAATCCCAGATGATGCCATTCCCACAGCTGACGAGGCTACCATTCTAATAAACTCTCTTGCTAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCCCCAAAACACTGGATGTTGGACAAGCTGGGTGGTGCCTTTGCACCCAAGCCATCATCTGGACCTCACAAGTCAAGGGAGTGCTTACCTCTTATCCTTATCCTGCGTAATAGGTTGAAGTATGTTCTCACCTATAGAGAAGTCATCGCCATTTTGATGCAGCGCCATGTTCTGGTTGATGGGAAGGTTAGGGCAGACAAGACATATCCTGCTTCATGGATGTTGTGTCCATCCCCAAGACCAATGAAAATTTCCGTCTACTTTATGACACAAAAGGTCGTTTCCGTCTCCAATCTATCAGGGACGAAGAGGCAAAGATCTGTGGCTTTTGGGCAGAAGGGCATTCCCTATCTTAACACCTATGATGGGCGCACCATCCGCTATCCTGATCCCTTAATCAGGGCAAATGACACCATCAAACTGGACTTGGAAACTAACAAGATCACTGACTTCATCAAGTTCGATGTGGGCAACGTGGTCATGGTGACTGGAGGAAGGAACAGGGGCCGTGTTGGTGTTACCAAGAACAGGGAGAAGCACAAGGGAAGTTTTGAGACCATCCATGTCCAGGATGCAACTGGTCATGAATTTGCTACTCGTATGGGAAATGTCTTCACAATTGGAAAAGGTACAAAACCATGGGTTTCTCTTCCCACAGGCCGTGGTATCAAGTTATCTATCATTGAGGAGGCTAGAAAGAGGCTGGCTCCTCAACATGAGGCAACTGCATAA 1245 0.4627 MEDPVTEGEVRLPPLNIGAEEKVERKSGFHSNQETQEEREEGKGSGGLIRSLMSTMATPTGTRSGEGETENDTRNEIPKKEVEEGGGILNNIISNLFHQNDDERGQKTEGDEEKNKQVKTVEEEKNGGVIENMVSHLPPSIPDDAIPTADEATILINSLARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYVLTYREVIAILMQRHVLVDGKVRADKTYPASWMLCPSPRPMKISVYFMTQKVVSVSNLSGTKRQRSVAFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVTKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWVSLPTGRGIKLSIIEEARKRLAPQHEATA 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1157 414 FunFam 40S ribosomal protein S4 325 395 - -
Lele44g1157 414 Gene3D - 325 395 IPR014722 -
Lele44g1157 414 CDD KOW_RPS4 325 379 IPR041982 -
Lele44g1157 414 MobiDBLite consensus disorder prediction 51 66 - -
Lele44g1157 414 FunFam 40S ribosomal protein S4 159 250 - -
Lele44g1157 414 MobiDBLite consensus disorder prediction 18 45 - -
Lele44g1157 414 MobiDBLite consensus disorder prediction 96 117 - -
Lele44g1157 414 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 161 404 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele44g1157 414 MobiDBLite consensus disorder prediction 100 117 - -
Lele44g1157 414 Gene3D - 159 273 IPR036986 GO:0003723
Lele44g1157 414 Pfam 40S ribosomal protein S4 C-terminus 362 407 IPR032277 -
Lele44g1157 414 ProSitePatterns Ribosomal protein S4e signature. 166 180 IPR018199 -
Lele44g1157 414 MobiDBLite consensus disorder prediction 1 75 - -
Lele44g1157 414 FunFam 40S ribosomal protein S4 274 322 - -
Lele44g1157 414 Pfam Ribosomal family S4e 278 319 IPR013845 -
Lele44g1157 414 Pfam RS4NT (NUC023) domain 161 197 IPR013843 -
Lele44g1157 414 Gene3D - 275 322 IPR038237 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1157 Lele-ChrLele44 20157320 20163219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1157 159 412 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 75.191 1.09e-142 405