Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1145 ATGACGAACTCCTTCACCGACCTCCTTTCCATGGATGATCATCGCTGGCCTTCGTCTTCTTATTCTGAAATCCCTAAATTTAAGTCAACTCCACCCCCTTCTTTGCCCCTTTCTTGTTCGCCTCTATCTCCTTCTTCTTATTTGGCTTTCTCTTCTGGCTTTAGCCCTACCCAGTTCTTGAGCTCTCCCTTATTTCTCTCATCCCCAAACGTTCTTCCTTCTACTGAGACGTTTCAGAACAAGGAGCAGGAGCAGAAACCATTCTCTGAATTCTCCTTCCAAACCCAATCCAAGTCGTCGTCTTTCTTGGAATATTCTTCCAGCATGTTTCAAGCGCAGGAACCACCGAAACAAGAACCAGCTTGGAATGAGAAGACATCTTCAAAATCTGAATATCCATCAACTCAGAGCTTCTCCTCAGAACTACAGATGCAAAGCAATTTGGCTCCTGCTTCTGGTTATACTAATAACTACGCGAATTCTTCCCAGTCCATAAGGGAGCAAAAGAGGTCAGACGATGGGTATAACTGGAGAAAATATGGACAGAAACAGGTGAAGGCGAGCGAAAATCCTCGCAGTTATTACAAGTGCACGCATCCGAGTTGCAACATGAAGAAGAAGGTCGAGAGGGCTCTGGATGGACAAGTTACTGAGATAGTATATAAGGGAACACATAACCATCCCAAGCCTCAGTCCACTAGAAGATCTAGCTCTCAATCAATTCAACCTTCTTCCTCTTGTACTAATTCTGGGCTTTCTGATCAATCCGCGGTGAGCCTAGGGAATCTACAAATGGAGCGAACCTCTTTCCAAGAAGATTCTTCTGTCTCTGTTGGAGAAGATGACTTTGAGCACACATCTCAAACCTGTTACTCTGGGGGTGATGACAATGACTTTGGCCCTGATGCCAAAAGATGGAAAGGAGAGAATGAAATTGATGGCTATGCCTCATCCGGGAATAGAACTGTGAGGGAACCAAGAGTTGTAGTTCAAACTACAAGTAAGATTGATATTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAAGTGGTTAAAGGAAATCCAAACCCAAGGAGCTACTACAAGTGCACAGCTCCAGGCTGTTCGGTGAGGAAACATATTGAGCGAGCTGCACATGATATGAAAGCTGTGATCACAACGTACGAAGGGAAACACAACCACGATGTTCCTGCAGCACGAGGGAGTGGGAGTTATAACCTGAACGCAGCTTCTCTGAACAGCAACACCATCAACAACAATGTTACCCCACCTATAAGGCCATCGGCGTCTTCAGCATTGACCAGCTATTCTGGCAAATCAAGTTTCACAAACTCGCTTAATAACACAAGCCAGCCAACATCTGCTGCAAGTCAAGAACCTTTTCTATTTGAAATGTTGCAGAGCCCAACAAGTTTTGCATACTCTGATTTCGTTACATCAATGGGATCGTATAACCCTAACGCATAA 1473 0.4447 MTNSFTDLLSMDDHRWPSSSYSEIPKFKSTPPPSLPLSCSPLSPSSYLAFSSGFSPTQFLSSPLFLSSPNVLPSTETFQNKEQEQKPFSEFSFQTQSKSSSFLEYSSSMFQAQEPPKQEPAWNEKTSSKSEYPSTQSFSSELQMQSNLAPASGYTNNYANSSQSIREQKRSDDGYNWRKYGQKQVKASENPRSYYKCTHPSCNMKKKVERALDGQVTEIVYKGTHNHPKPQSTRRSSSQSIQPSSSCTNSGLSDQSAVSLGNLQMERTSFQEDSSVSVGEDDFEHTSQTCYSGGDDNDFGPDAKRWKGENEIDGYASSGNRTVREPRVVVQTTSKIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCSVRKHIERAAHDMKAVITTYEGKHNHDVPAARGSGSYNLNAASLNSNTINNNVTPPIRPSASSALTSYSGKSSFTNSLNNTSQPTSAASQEPFLFEMLQSPTSFAYSDFVTSMGSYNPNA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1145 490 MobiDBLite consensus disorder prediction 72 93 - -
Lele44g1145 490 MobiDBLite consensus disorder prediction 269 300 - -
Lele44g1145 490 MobiDBLite consensus disorder prediction 226 255 - -
Lele44g1145 490 MobiDBLite consensus disorder prediction 1 35 - -
Lele44g1145 490 ProSiteProfiles WRKY domain profile. 166 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 SUPERFAMILY WRKY DNA-binding domain 167 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 SUPERFAMILY WRKY DNA-binding domain 331 399 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 MobiDBLite consensus disorder prediction 1 27 - -
Lele44g1145 490 Gene3D WRKY domain 156 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 Pfam WRKY DNA -binding domain 340 396 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 Pfam WRKY DNA -binding domain 172 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 ProSiteProfiles WRKY domain profile. 334 399 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 62 431 IPR044810 GO:0003700
Lele44g1145 490 SMART WRKY_cls 171 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 SMART WRKY_cls 339 398 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 MobiDBLite consensus disorder prediction 269 294 - -
Lele44g1145 490 Gene3D WRKY domain 326 392 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele44g1145 490 FunFam WRKY transcription factor 33 326 392 - -
Lele44g1145 490 MobiDBLite consensus disorder prediction 108 165 - -
Lele44g1145 490 FunFam WRKY transcription factor 160 231 - -
Lele44g1145 490 MobiDBLite consensus disorder prediction 223 255 - -
Lele44g1145 490 MobiDBLite consensus disorder prediction 108 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1145 Lele-ChrLele44 20087917 20089996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1145 23 469 WRKY Transcription Factor Family AT2G38470 49.028 4.71e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele44g1145 WRKY 2.3e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g1145 44 20087917 20089996 Lele37g1382 37 22615163 22617589 CCT
Lele44g1145 44 20087917 20089996 Lele39g0042 39 313153 318496 CCT
Lele44g1145 44 20087917 20089996 Lele40g1200 40 21877727 21879642 CCT
Lele44g1145 44 20087917 20089996 Lele44g1145 44 20087917 20089996 ECH
Lele41g0207 41 1660168 1662244 Lele44g1145 44 20087917 20089996 hybridization
Lele42g0201 42 1651002 1653123 Lele44g1145 44 20087917 20089996 hybridization