Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1111 ATGGCGATTCCTCCTCAAATCTTCCCTCCTCGTAAACGACGGCCGTCGGCGGGGTCGTTTATCTCTCCCAAACTCACAGAACTCGACCTCCTTCACTCTCTGCTTCACCTAACCCATGAGATTTCCTCTCTCAAACCCATCCACTTCCTTCTCAGACTCAATTCATCTTCCGTCATTCGTAAAACCAATCTCCTCGCTGTTCTCTTCGAAGAGTTGATTAGATGTTCGGTTTCTCTTTCCTTTCAATCTGTCATTTTGTGTTTCGAAGAAATGTATATAGTTCTACAGAGAATCAAGACCTTGATTGAAGATTGCTCCAACGGAAGCAAGATGGCGCTGTTGATGCAGAACGAATCGGTTTCTGATAGTTTTCACAAACTCACTGCGGATTTATCGACGCTTTTGGATATTTTCCCTGAGACGGAGCTTGAATTGAGCGACGACGTGCGAGAGCTTGTGATCCTGATCAGAAAACAATGCACTGAATCCAAGGCTTTTTTGGATCCGAAGGACAACGAGCTCAGGCATGAGGTTGTCACGATGCTTGATCGTATTAAGCGGGAGATCGTCCCCGATCATTGGAAGCTTGCGGATATCTTCGAGAGGTTGGAAATCCGAGATTCTTCGAGTTGTAGAACGGAGATTGAGAGTATAGAGGAGGAGATTCAGAATCGAAACGATGAGCAATCCAAATCAGAGCTCGTCGCTTTGATCGGACTCGTCCGATACGCGAAATGCGTCCTTTTCGGAGCTTCCACGCCGTCATCTTCTTCCTCTGATGATGAAGTACAGCGGCGGAAACAGCCATCGGAGATCGTTGTCCCGGCGGATTTCAGGTGCCCGATCACTCTCGAGCTGATGCTCGACCCGGTTGTCGTGGCAACAGGACAGACGTACGATCGTGAGTCCATCAAGCTATGGTTCGAATCAGGGCATAACACGTGTCCCAAGACTGGTCAAACTGTGGCCCACACGGACCTCATCCCGAACCGTGCATTGAAGAATCTTATAGCAATGTGGTGCCGCGAGCAAAAGATACTGTTTGAAACCGCGGGCAGTAACGACAAACCTCACCGCGTTATCATCAACAAAGCCGCCTTGGTAGCAACTAGAATGACGGCGTCATTCTTAGTCAACAAGTTGTCTCTTTCTCTGTCCATGGAAGCCGCAAACGCGGTCGTTTATGAGCTTCGTGTTCTCTCTAAAACAGACTCCGATAGCCGAGCCTGCATAGCCGAAGCCGGAGCCATCCCCCACCTAGTTACCTACTTGAGCTTCAACGTCGGCTCACAGAATCCAAACGTCCAAGTTAACGCCGTCACAACCATCCTCAACCTTTCCATACTCGAGGCGAACAAAACGAGGATAATGGAGACGGATGGAGCTTTAAACGCCGTCATGGAGGTCCTTCGCTCGGGAACCGCGTGGGAGGCGAAGGCCAACGCAGCCGCCACAATATTCAGCTTATCTGGCGTTCCCTCGTATAGGAAAAGACTAGGGAGGAAGACACGTGTCACACGGGGGTTGATTGACTTGGCAAGGTGTGGGCCCACAGGAGCTAAGAGGGATGCTCTGGTGGCAATTTTGACCCTGGCGGCGGATAGAGAGACGGTGGCAAGGTTGGTGGAAGCTGGGGTTATGGAGATGACGGCGGAAGTGATGGACGGGTTACCGGAAGAGGCAGTGACAATTCTTGAGGTGGTTGTGAAGCGGGGCGGGTTGGTGGCCGTCGCTGCCGCGTTCGGCAGCATTAAGAAATTGGGCGTTATATTGAGGGAAGGTTCTGATAGGGCCAGAGAGAGTGCGGCGGCGACGCTCGCCACAATGTGTCGTAAAGGGGGGACGGATATAGTGGCCGAGTTGGCCTCCTTGCCGGGAATTGAAAGAGTGATATGGGAATTGATGGCTATTGGGACTGTAAGAGGTAAAAGAAAAGCCGCCATGTTGTTGAGGGCTCTCCGACGATGGGCTGCCGGTTTGGACAGTGCAGGGCCAACGGAAGGATTTTCAACCGCCATCACTTCGTCAACAACGATGGTTTCAACTCAATAG 2052 0.5117 MAIPPQIFPPRKRRPSAGSFISPKLTELDLLHSLLHLTHEISSLKPIHFLLRLNSSSVIRKTNLLAVLFEELIRCSVSLSFQSVILCFEEMYIVLQRIKTLIEDCSNGSKMALLMQNESVSDSFHKLTADLSTLLDIFPETELELSDDVRELVILIRKQCTESKAFLDPKDNELRHEVVTMLDRIKREIVPDHWKLADIFERLEIRDSSSCRTEIESIEEEIQNRNDEQSKSELVALIGLVRYAKCVLFGASTPSSSSSDDEVQRRKQPSEIVVPADFRCPITLELMLDPVVVATGQTYDRESIKLWFESGHNTCPKTGQTVAHTDLIPNRALKNLIAMWCREQKILFETAGSNDKPHRVIINKAALVATRMTASFLVNKLSLSLSMEAANAVVYELRVLSKTDSDSRACIAEAGAIPHLVTYLSFNVGSQNPNVQVNAVTTILNLSILEANKTRIMETDGALNAVMEVLRSGTAWEAKANAAATIFSLSGVPSYRKRLGRKTRVTRGLIDLARCGPTGAKRDALVAILTLAADRETVARLVEAGVMEMTAEVMDGLPEEAVTILEVVVKRGGLVAVAAAFGSIKKLGVILREGSDRARESAAATLATMCRKGGTDIVAELASLPGIERVIWELMAIGTVRGKRKAAMLLRALRRWAAGLDSAGPTEGFSTAITSSTTMVSTQ 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1111 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 461 IPR000225 GO:0005515
Lele44g1111 683 CDD RING-Ubox_PUB 278 320 IPR045210 -
Lele44g1111 683 Pfam U-box domain 274 345 IPR003613 GO:0004842|GO:0016567
Lele44g1111 683 Gene3D - 377 518 IPR011989 -
Lele44g1111 683 SUPERFAMILY RING/U-box 273 346 - -
Lele44g1111 683 Gene3D - 522 657 IPR011989 -
Lele44g1111 683 PANTHER U BOX DOMAIN-CONTAINING 46 653 - -
Lele44g1111 683 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Lele44g1111 683 FunFam RING-type E3 ubiquitin transferase 271 347 - -
Lele44g1111 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 351 IPR013083 -
Lele44g1111 683 SMART arm_5 404 448 IPR000225 GO:0005515
Lele44g1111 683 SUPERFAMILY ARM repeat 376 653 IPR016024 -
Lele44g1111 683 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Lele44g1111 683 Pfam Armadillo/beta-catenin-like repeat 405 447 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1111 Lele-ChrLele44 19752513 19754564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1111 9 659 U-box Gene Family AT5G01830 58.931 0.0 738