Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g1102 ATGCATCGCCGACTTCTCGACGCCGGGCTTAGTGTGGCTCCGGCATATGGGAATAAGACCCGAGAATCGTTCGTGGGCGATGTGAACTTCGACGCGAACATGGTGATCATATTGGCGGCTTTGTTGTGCGCATTGATATGCGCTCTTGGATTGAACACGATAGTGCGATGTGTGTTGCGATGTAGCCAAAGATTTTCCACAGAGACCACAGAACAAACAGCTTCTAGGCTTGCCTCAACGGGCCTGAAGAAACGTCACCTGAGCCAGATTCCGGTGAAAGAGTACGGACCCGGTGCGAATATTCCGGCGACGGAGTGCCCCATATGCCTCGGGGAGTTCGAGAAAGGAGATAAGGTGCGAATGCTGCCAAAATGCAATCACGGATTCCATGTGAGGTGCATCGACACATGGCTTTTGTCACATTCTTCTTGCCCAAACTGTCGCCATCCGCTGCTAGAGAAATTCACAAATCCAAATTCAAATTCGAATAGGAGGATTGAAGGAGGAGAAGTCGCCGGAGCTCAGGTGCCGTCAGATGGATCCGGCAACATGCAATTTCACGCTGTGGTGGTCGACCAGCAGGCAAGTTGA 591 0.5178 MHRRLLDAGLSVAPAYGNKTRESFVGDVNFDANMVIILAALLCALICALGLNTIVRCVLRCSQRFSTETTEQTASRLASTGLKKRHLSQIPVKEYGPGANIPATECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLLSHSSCPNCRHPLLEKFTNPNSNSNRRIEGGEVAGAQVPSDGSGNMQFHAVVVDQQAS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g1102 196 Pfam Ring finger domain 105 148 IPR001841 -
Lele44g1102 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 157 IPR013083 -
Lele44g1102 196 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lele44g1102 196 SMART ring_2 106 147 IPR001841 -
Lele44g1102 196 CDD RING-H2_EL5_like 105 148 - -
Lele44g1102 196 SUPERFAMILY RING/U-box 91 159 - -
Lele44g1102 196 SMART FANCL_C_2 102 156 - -
Lele44g1102 196 PANTHER RING-H2 FINGER PROTEIN ATL78 25 161 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g1102 Lele-ChrLele44 19661860 19662450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g1102 4 164 C3H Transcription Factor Family AT3G10910 57.647 4.63e-59 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g1102 44 19661860 19662450 Lele44g1102 44 19661860 19662450 ECH
Lele41g0251 41 2066757 2067359 Lele44g1102 44 19661860 19662450 hybridization
Lele42g0243 42 2106527 2107117 Lele44g1102 44 19661860 19662450 hybridization