Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0983 ATGGTAAAGTCTGGCGTGGTGGCGGTGGACTCTGATCCGACGGATGCGGCGTCGACCGCGACCAAGGTATTGGAGTTGAAGAAGGAGTTGAACAGATTGGTGAAGTCCATCGTCGACGATGATGATTGCAGCATCCAAATCATTGATCAAGCTAAGGAAGCTCTTTCTGCTCTTAAGGACCTCAAGCTTCGGAAGAGATCATCGTCATCACCATCTTCACAACAATCTTCGTCTTTCAAGCTGAACAGAAATTCCGCTTTTCCAGAAGAATTTAAGTGCCCTCTTTCAAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGAAAGACATATGATAGGCCCTTTATTCAAAAATGGCTGAAAGCTGGGAACAGAACTTGTCCTCAAACACAGCAAGTCCTCTCACACATTGTCCTCATTCCAAATCAACTCATAAGGGAGATGATAGAACAGTGGTGTAAGAACCATGGGGTGGAATTATCCAACCAACTTCACTATATTTACAATGAGGAAGACATAATAACGAAAGGAGATCGCGATCAGTTTCATTCTCTGCTCGAGAAAATGTCCTCACCATTGCTTTCTGAGCAGAAAGCAGCCGCGAAGCAGCTTCGGTTATTGACGAAGAAGATGCCTTTGTATAGAACACTCTTTGGTGAGACTCCACAAGCCATTTCTGAGATTCTCAAACCGATCTCCTCTGCAAGTGACTCTTTTAACAACACTCATCCTGATCTCCAAGAAGATGTGATCACAACACTTTTGAACATCTCAATCCATGACAACAACAAGAAGCTCGTCGCAGAAACACCCTTGGTGATTCCACTCCTTGTGAAAGCCTTAAATTCAGGAACTATAGAAACTAGAAGCAATTCTGCAGCTACCCTTTTCACTTTATCCGCTCTAGACTCGAACAAGGAGCTTATAGGAAAATCTGGCGCCTTAAAGCCATTAATCGACCTCTTAGAAGAAGGCCATCCTTTAGCCATGAAAGATGTTGCTTCAGCAATGTTCATCTTGTGCGTGGTTCACGAGAACAAGGCAAGAGCAGTGAGGGAAGGGGCGGTGAGTGTTATACTGAGGAAGATCTCAAGCCAGGTCTATGTCGACGAATTGCTCACTATCCTCGCGCTGCTCTCGAGTCATCAAAAGGCTGTTCAGGACATGGTAGATCTTGGCGCTGTTCCTAACTTGCTGAGCATCATGAGGGAGACCAATTGCGACCGAAACAAGGAGAACTGCATTGCGATTCTCCAAACTATATGTCAGTATGACAGAGCAAAGTTGAAGGAGATGAAAGAAGAGGAGATTACCTTTAGAACTATCACTGATCTTGCGTTGAATGGAACTTCAAGGGCTAAGAGAAAGGCTAGTGGAATTCTTGAGAGACTTAATAGGGTTGTTAATATTACACACACTGCATAA 1428 0.4419 MVKSGVVAVDSDPTDAASTATKVLELKKELNRLVKSIVDDDDCSIQIIDQAKEALSALKDLKLRKRSSSSPSSQQSSSFKLNRNSAFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKAGNRTCPQTQQVLSHIVLIPNQLIREMIEQWCKNHGVELSNQLHYIYNEEDIITKGDRDQFHSLLEKMSSPLLSEQKAAAKQLRLLTKKMPLYRTLFGETPQAISEILKPISSASDSFNNTHPDLQEDVITTLLNISIHDNNKKLVAETPLVIPLLVKALNSGTIETRSNSAATLFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAMFILCVVHENKARAVREGAVSVILRKISSQVYVDELLTILALLSSHQKAVQDMVDLGAVPNLLSIMRETNCDRNKENCIAILQTICQYDRAKLKEMKEEEITFRTITDLALNGTSRAKRKASGILERLNRVVNITHTA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0983 475 SMART Ubox_2 90 153 IPR003613 GO:0004842|GO:0016567
Lele44g0983 475 CDD RING-Ubox_PUB 91 133 IPR045210 -
Lele44g0983 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 165 IPR013083 -
Lele44g0983 475 ProSiteProfiles U-box domain profile. 86 160 IPR003613 GO:0004842|GO:0016567
Lele44g0983 475 SUPERFAMILY RING/U-box 86 161 - -
Lele44g0983 475 SMART arm_5 261 302 IPR000225 GO:0005515
Lele44g0983 475 SMART arm_5 383 424 IPR000225 GO:0005515
Lele44g0983 475 SMART arm_5 303 343 IPR000225 GO:0005515
Lele44g0983 475 FunFam RING-type E3 ubiquitin transferase 173 471 - -
Lele44g0983 475 SUPERFAMILY ARM repeat 180 465 IPR016024 -
Lele44g0983 475 PANTHER U BOX DOMAIN-CONTAINING 49 465 - -
Lele44g0983 475 FunFam RING-type E3 ubiquitin transferase 86 160 - -
Lele44g0983 475 Gene3D - 166 469 IPR011989 -
Lele44g0983 475 Pfam U-box domain 88 157 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0983 Lele-ChrLele44 18580262 18582884 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0983 149 475 U-box Gene Family AT3G07360 59.517 3.69e-133 386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0379 41 3095443 3098027 Lele44g0983 44 18580262 18582884 hybridization
Lele42g0362 42 3143403 3146055 Lele44g0983 44 18580262 18582884 hybridization