Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0982 ATGAGTATATTATACGAGGGCAATTACTCTAATGCCCAACAATATCCGGTTTATTTCACGAATCGTGCTCTATGCCATCTCAAGCGGAATGACTGGGCGAGAGTGGAGGAAGATTGTCGTAAAGCTATTCAACTTAATCACAAGTCAGTCAAGGTTGCGCACTATATGTTGGGACTTGCTTTGCTGCGGAGGCAAGAATATGCCAAGGGAATAGCAGAATTACAGAAGAGTTTTGTTATTCCATCTTTACCATTTGACTCCCAAGTCTCCCATGGATCTGCTTTGGATCTTGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTAGCAAAAGCAAAATACCAAGATTGGGAACGTTCATCTACCAAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCTCTAAAGGAAAAGCATCTACATGGCGTTTCCCAAGGGGAAGGCGACGACTTTGTAGTTGTAGATGAAGATCTAACCACCCCATCAGAACAGCTAGCGGCTTTAGGAAGAGTGTTTAGTAAAGCTGCAGAGGATGATACACCTACTGAGGTGCCAGATCACCTTTGCTGTAGAATCACACTCGAAATTTTCCGGGATCCTGTCATCACTCCGAGTGGCCTTACGTATGAGAGGGCAGTGATTCTTGACCATCTTGAGAAGGTATCGCGACGACTTTTCAAAGTTCAAACTGTTGAGCTTATTCAGTTGCTCATATTTTTCGGTCATGCAAGATCCAATTTTGGCTCAAATGTAATATTCTATCTTAATCAGCATTAG 807 0.4399 MSILYEGNYSNAQQYPVYFTNRALCHLKRNDWARVEEDCRKAIQLNHKSVKVAHYMLGLALLRRQEYAKGIAELQKSFVIPSLPFDSQVSHGSALDLGRGANPKGYMVEEIWQELAKAKYQDWERSSTKRSWELQSLKEACESALKEKHLHGVSQGEGDDFVVVDEDLTTPSEQLAALGRVFSKAAEDDTPTEVPDHLCCRITLEIFRDPVITPSGLTYERAVILDHLEKVSRRLFKVQTVELIQLLIFFGHARSNFGSNVIFYLNQH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0982 268 SMART Ubox_2 197 247 IPR003613 GO:0004842|GO:0016567
Lele44g0982 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 247 IPR013083 -
Lele44g0982 268 Gene3D Tetratricopeptide repeat domain 4 130 IPR011990 GO:0005515
Lele44g0982 268 SMART tpr_5 16 49 IPR019734 GO:0005515
Lele44g0982 268 Pfam U-box domain 194 232 IPR003613 GO:0004842|GO:0016567
Lele44g0982 268 SUPERFAMILY RING/U-box 186 229 - -
Lele44g0982 268 SUPERFAMILY TPR-like 11 77 IPR011990 GO:0005515
Lele44g0982 268 ProSiteProfiles U-box domain profile. 193 268 IPR003613 GO:0004842|GO:0016567
Lele44g0982 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 10 232 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0982 Lele-ChrLele44 18570910 18575250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0982 16 233 U-box Gene Family AT3G07370 60.550 1.61e-89 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0380 41 3101468 3108725 Lele44g0982 44 18570910 18575250 hybridization
Lele42g0363 42 3153175 3158267 Lele44g0982 44 18570910 18575250 hybridization