Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0934 ATGGTGGCACTGCATCATCCAACATGGGGTTTTTCTTGGAGCTTGCAGCAGTTTCTTCTTCATGTCATTGACAACTCTAATTGCAACACATCTTTCTTGATGGATAAAGATATTGGTTATTGTCATTTTAGATGCATTGCTTGTTTTATACATCTTGATTATCTTTTTTCCCAAGTTCTGATCATGATTCGTAAATCAGGATGCTACCAATGTGTTGATGAGATTGATGGGCCAGCTTCCTACAATTCAATAATCTTTCATTTGATTCAGGTGATAATGTTAATGCAGAGTTCTCTTCCTAGTTCAATTGAAGCTGCTTTATTTCATGCATCTGATAAAGGGAAAAAAGATGCTCTATGTGACTGGATGCCTAGTGCTGAAACTTGCCAGGTGTGCCTGAAATGCAAAAAATACCCTCTTTACTGCTGCAGAAAAGTTGAAGCAATGAAAGAGCAGGAGGATAGAAGGAGCGATGATGTTCTGTGCTGCAGAAAAGTTGAAGCAATGCATGAGCAAGAGGATAGAAGGAATGGTGATGTTCCATGCTGCAGAGAAGTTGAAGCAATGCATGAGCAAGAGGATAGAAGGAATGGTGATGTTCCATGCTGCAGAAAAGTTGAAGCAATGCAAGAGCAAGAGGATAGAAAGCAAGAGGATAGAAGGAATGATGATGTTCCGTGCAGCTCAAACTGTATAAGTAGCTTAGATCGACCATCAACTGTGAGTACAATGACTGGAAATACTTTGCCCAATCTAGTATACAAGAGAAAGAAGGTACGGAAGAATTCAACCGCACCCCTTTTAAAAGTAGGACCTACGTCTGTGCCAGTTAGTGCCAATTGCACTTCATTCGTAAGCCCCTGTTCTCGTAGATTACCTTTGGAGCATCAGCCAGCCAGCTCTCAAGTTGAGCAAGATATTGAAATGGTTAAAGACCCTGTTGCACCCATTGTCTTATGCAAAACAGCAATAGATAACAGCACACCTAAAAATTTAGGTATTGACTGCATTAATGATAGTTGCTCCTCATCAAAATCAATTATGGAAATTGTTTCAGAATCCATAGAAACTGGAGTGGATGACACTGGCGAATGCTCCTCCTCTAGTGTATTAGTCATGGATTTCCCTAGGGAAGACCTAACAGCAAAGGATTTCTGCATCAAAATTCTAAAAAGCCATGGACTCCTTGGAGGAGATTCACATGCTGATACTGTAGCTTCTCAAGCACAGGCTACTACCTCTGGTAATAGTTGCAGTTCCCGGTCATGCAAAATATGTGGCCATTTAGATGGCTCATTGAACATGCTTATATGTGATCATTGTGAAGAGGCATACCATCCATACTGCATCATTCCGCGAATGAAAAAGTTACCAATTGATGAATGGTTTTGTCATTCATGTATAAAAAAGAAGCAAAAACTTCTCAAGGAGATGATTATTAGAAGTTCACCAAATATCAACATTGAAATGGAATTATGCAGATCTTCCTCAGTTAATGGAGGATTGAATCCTATACTGTTGATGTTGAATGATTTGGAGCCAAGTACAACTGGTGTACGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCCTGAATGGTTAGGTCCAATAGGAAGCAATGATGACTGTGCTGGACCATTGGAAATTGGTTCTTCAGAATTTTCCAGTTTACCGGAAAAGAATCTCAAAAGGTCAACTAGACTCAGCTCCATTGGCAATTGGCTTCAGTGTCAAGAGGTCGTAGATAGAGCCAAAGGAACTATATGTGGGAAATGGCGCAGGGCTCCCCTTTTTGAAGTCCAAAATGATAATTGGGAGTGCTTCTGTGCCATCCATTGGGATCCAGCTCATGCTGATTGTGCTGTACCTCAGGAATTGGAAACAGATCAAGTTCTGAAGCAACTGAAGTATATAGAAATGTTGAGGCCACGACTCTCCGCAAAACGTTCAAAAATCAACGGCAAAAAGGGTGGTGAATGA 1977 0.4067 MVALHHPTWGFSWSLQQFLLHVIDNSNCNTSFLMDKDIGYCHFRCIACFIHLDYLFSQVLIMIRKSGCYQCVDEIDGPASYNSIIFHLIQVIMLMQSSLPSSIEAALFHASDKGKKDALCDWMPSAETCQVCLKCKKYPLYCCRKVEAMKEQEDRRSDDVLCCRKVEAMHEQEDRRNGDVPCCREVEAMHEQEDRRNGDVPCCRKVEAMQEQEDRKQEDRRNDDVPCSSNCISSLDRPSTVSTMTGNTLPNLVYKRKKVRKNSTAPLLKVGPTSVPVSANCTSFVSPCSRRLPLEHQPASSQVEQDIEMVKDPVAPIVLCKTAIDNSTPKNLGIDCINDSCSSSKSIMEIVSESIETGVDDTGECSSSSVLVMDFPREDLTAKDFCIKILKSHGLLGGDSHADTVASQAQATTSGNSCSSRSCKICGHLDGSLNMLICDHCEEAYHPYCIIPRMKKLPIDEWFCHSCIKKKQKLLKEMIIRSSPNINIEMELCRSSSVNGGLNPILLMLNDLEPSTTGVRVGKGFQAEVPEWLGPIGSNDDCAGPLEIGSSEFSSLPEKNLKRSTRLSSIGNWLQCQEVVDRAKGTICGKWRRAPLFEVQNDNWECFCAIHWDPAHADCAVPQELETDQVLKQLKYIEMLRPRLSAKRSKINGKKGGE 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0934 658 SUPERFAMILY FYVE/PHD zinc finger 410 472 IPR011011 -
Lele44g0934 658 SMART PHD_3 422 468 IPR001965 -
Lele44g0934 658 Gene3D - 571 636 - -
Lele44g0934 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 479 IPR013083 -
Lele44g0934 658 ProSiteProfiles Zinc finger PHD-type profile. 420 470 IPR019787 -
Lele44g0934 658 ProSitePatterns Zinc finger PHD-type signature. 423 467 IPR019786 -
Lele44g0934 658 Pfam PHD-finger 423 469 IPR019787 -
Lele44g0934 658 ProSiteProfiles Zinc finger CW-type profile. 567 627 IPR011124 GO:0008270
Lele44g0934 658 FunFam uncharacterized protein LOC106759733 isoform X4 571 636 - -
Lele44g0934 658 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 416 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0934 Lele-ChrLele44 18032716 18043878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0934 423 496 C2H2 Transcription Factor Family AT3G01460 32.051 1.47e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele44g0934 PHD 1.3e-09 CL0390