Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0905 ATGCTGGCCAGAAATATGATAGAGGTGGAAATAAAGGGTGGTAGCTTCACCTGGATCAACAAAAGTGAAGAGGATGATTTTATGGTGGAAAAGTTCGATTTAAATAATAGGGTCTCTTTCCAACAAAGGAAGAACACAAATGAGAACAAGCTAGGAATTCCTATTTTGCTTTTGGCGACTCTGTTTCTGTGTCTAGGGTTTTCCTCTCTTGCCCCGGATTTCAAATCAAACAGCCGCTGTTATCGACGTCACTCCGTCACACACAGCGTCATGAAGCTCACCGTCAAGACTTTGAAAGGAAGCCATTTCGAAATCAGGGTTCAACCTTCAGACACTGTCATGGCTGTCAAGAAGAATATAGAAGATGTACAAGGAAAAGATAATTACCCATGCGGACAGCAGTTGCTTATTTTTAATGGCAAAGTTTTGAAAGATGAAACTACACTAGCGGAGAACCAGGTCTCTGAAAATGGATTTCTTGTTGTCATGCTTAGCAAGAGTAAAACTTCAAGTTCAGCTGGGGTTTCATCCACTCAGCCTGCTACCAATCCATCTACAACTGCATCAACCCAAAATTCGACTCCTCCTGCACCTGAACCTCCGGTACAAAGTACTCAGGCTACAGTGAACAGTTCTTCTCCGGAAAATGTCACAGCTACAAACGTTCCTGTGGATTCTTACGGTCAGGCTGCTTCAAATTTAGCTGTTGGTGGTGATCTTGAGCGGACTATTCAACAAATCATGGACATGGGAGGTGGCAATTGGGACAGAGAAACAGTTATACGTGCTCTTCGGGCAGCTTACAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATCCCTGAAGCCGCAGAGGTTGCCATACCAGTCCCTCATTACCCAGCCAGTCAGACAACTGAAACAGGTGGGGCAACTGCTGGAGGTGTTTCTGGGGCACCTAATACATCACCGTTAAACATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGACTTGGATCTCTTGAATTCCTTAGAAACAACCCCCAGTTTCAAGCATTGCGGTCCATGGTGCATTCTAATCCTCAAATTCTACAGCCTGTACTTCAAGAGCTTGGAAAGCAGAATCCTCATCTATTGAGACTAATTCAGGAGCATCATGCTGAATTTCTTCAGTTAATGAATGAACCCACGGAAGGTTCTGAAGGTGACATATTTGACCAGCCTGAGCAAGACATGCCCCACTCCATCAATGTGACACCAGCAGAACAGGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCATTTTTGGCTTGTGACCGTGATGAGCAATTGGCTGCCAACTACTTACTGGAGAATGCTGGAGATTTTGAGGATTGA 1392 0.4483 MLARNMIEVEIKGGSFTWINKSEEDDFMVEKFDLNNRVSFQQRKNTNENKLGIPILLLATLFLCLGFSSLAPDFKSNSRCYRRHSVTHSVMKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIFNGKVLKDETTLAENQVSENGFLVVMLSKSKTSSSAGVSSTQPATNPSTTASTQNSTPPAPEPPVQSTQATVNSSSPENVTATNVPVDSYGQAASNLAVGGDLERTIQQIMDMGGGNWDRETVIRALRAAYNNPERAVDYLYSGIPEAAEVAIPVPHYPASQTTETGGATAGGVSGAPNTSPLNMFPQETISGAGAGLGSLEFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLMNEPTEGSEGDIFDQPEQDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0905 463 TIGRFAM rad23: UV excision repair protein Rad23 91 462 IPR004806 GO:0006289
Lele44g0905 463 Gene3D - 85 167 - -
Lele44g0905 463 FunFam UV excision repair protein RAD23 B 328 394 - -
Lele44g0905 463 Pfam XPC-binding domain 338 393 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele44g0905 463 Pfam UBA/TS-N domain 241 278 IPR015940 -
Lele44g0905 463 Pfam UBA/TS-N domain 419 454 IPR015940 -
Lele44g0905 463 Pfam Ubiquitin family 93 166 IPR000626 GO:0005515
Lele44g0905 463 SUPERFAMILY UBA-like 398 460 IPR009060 GO:0005515
Lele44g0905 463 FunFam UV excision repair protein RAD23 homolog 233 283 - -
Lele44g0905 463 ProSiteProfiles Ubiquitin domain profile. 91 169 IPR000626 GO:0005515
Lele44g0905 463 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 417 457 IPR015940 -
Lele44g0905 463 SUPERFAMILY UBA-like 238 288 IPR009060 GO:0005515
Lele44g0905 463 CDD Ubl_Rad23 91 164 - -
Lele44g0905 463 Gene3D - 410 458 - -
Lele44g0905 463 FunFam UV excision repair protein RAD23 91 170 - -
Lele44g0905 463 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 241 281 IPR015940 -
Lele44g0905 463 MobiDBLite consensus disorder prediction 170 224 - -
Lele44g0905 463 Gene3D - 328 394 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele44g0905 463 Gene3D - 233 283 - -
Lele44g0905 463 PRINTS DNA repair protein Rad23 signature 413 429 IPR004806 GO:0006289
Lele44g0905 463 PRINTS DNA repair protein Rad23 signature 430 444 IPR004806 GO:0006289
Lele44g0905 463 PRINTS DNA repair protein Rad23 signature 364 386 IPR004806 GO:0006289
Lele44g0905 463 PRINTS DNA repair protein Rad23 signature 445 460 IPR004806 GO:0006289
Lele44g0905 463 SMART ubq_7 91 165 IPR000626 GO:0005515
Lele44g0905 463 SUPERFAMILY Ubiquitin-like 91 173 IPR029071 -
Lele44g0905 463 SUPERFAMILY XPC-binding domain 335 401 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele44g0905 463 PANTHER UV EXCISION REPAIR PROTEIN RAD23 91 452 - -
Lele44g0905 463 MobiDBLite consensus disorder prediction 203 224 - -
Lele44g0905 463 SMART uba_6 240 280 IPR015940 -
Lele44g0905 463 SMART uba_6 419 456 IPR015940 -
Lele44g0905 463 FunFam UV excision repair protein RAD23 homolog 410 458 - -
Lele44g0905 463 MobiDBLite consensus disorder prediction 170 193 - -
Lele44g0905 463 SMART CBM 336 379 IPR006636 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0905 Lele-ChrLele44 17419190 17427867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0905 91 164 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 2.62e-08 50.8