Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0881 ATGGGTTCTTCTTTTCTGAACACTCCATATAAGCCATGGACGCCTGCAGACTCTGTTCTTCGAGATTGTTCTCAAGGAATCTGCAGCTTCTATTGCCCTCAATGGTGCTCTGTCGTCTACCCTCCTCCTCCTCCTCCTCCTTTACCTTCTCTCACAGCCATCGGAGTCGCCGCCACTGCCACTGCCACTGCTGGTGACGATGACTCTTCTTCATTCCGGCTATCTCCCCTCATAGTGGCTCTCATCGGCATCTTAGGAAGTGTTTTCGTCTTAATCACTTACTACACTATCATCTCTCGATTCTGCACAAGACGCACCCGAATCCACCAAAACGACACCAACCAAGGGGTAAACGACAATAACGAATCGGCCACTCAAGGCTCGTCTTCTTCCGCTAATACCGGCGGCGGCGGCTTAGACGACCCCGTCATCAGATCTATCACAGTTTGTAAGTACAAGAAAGGAGATGGATTAGTCGAAGGTACGGATTGCTCTGTATGTCTCAGCGAATTCCAAGATAGCGAGAGCTTGAGATTGTTACCTAAATGCAAACACGCGTTTCATCTTCCTTGTATCGATACATGGTTGAGATCGCATTCGAGTTGTCCTCTATGCAGATCCAATATCGTCGAATCCAACACTTGTTCTTCTTCTTCTTCTGGTAATTTACAGAATCAAAGAGAGAATTCTCAGTTGCAGGAACCTTCGCGAACACAGAGCGTAAATGTGTCTGCGTTGGAATACCAGTATAGGAACGAAACAGTGATAGTGATTCAGGGTTCAGAACAGGAAATTCAGGTCGGTTTTGCAGGGAATTTGGAGGAGAGTAATGGGAGTGAATCAAATCGTCAAGGAAGATTGTTGTTGGTTGCTGATATATTGAGGAGTAGTGAAGATGATGAAGAAATCGAGATTGGATCGTCGAAGGAAAATCGAGATTTGATTCATTTTCCTGAAAAATTTGTGTACACAGAGATTAAAACTTGA 987 0.4529 MGSSFLNTPYKPWTPADSVLRDCSQGICSFYCPQWCSVVYPPPPPPPLPSLTAIGVAATATATAGDDDSSSFRLSPLIVALIGILGSVFVLITYYTIISRFCTRRTRIHQNDTNQGVNDNNESATQGSSSSANTGGGGLDDPVIRSITVCKYKKGDGLVEGTDCSVCLSEFQDSESLRLLPKCKHAFHLPCIDTWLRSHSSCPLCRSNIVESNTCSSSSSGNLQNQRENSQLQEPSRTQSVNVSALEYQYRNETVIVIQGSEQEIQVGFAGNLEESNGSESNRQGRLLLVADILRSSEDDEEIEIGSSKENRDLIHFPEKFVYTEIKT 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0881 328 MobiDBLite consensus disorder prediction 112 139 - -
Lele44g0881 328 CDD RING-H2_PA-TM-RING 163 206 - -
Lele44g0881 328 FunFam RING-H2 finger protein ATL54 139 212 - -
Lele44g0881 328 SMART ring_2 164 205 IPR001841 -
Lele44g0881 328 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Lele44g0881 328 MobiDBLite consensus disorder prediction 215 238 - -
Lele44g0881 328 SUPERFAMILY RING/U-box 158 212 - -
Lele44g0881 328 MobiDBLite consensus disorder prediction 112 136 - -
Lele44g0881 328 Pfam Ring finger domain 163 206 IPR001841 -
Lele44g0881 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 216 IPR013083 -
Lele44g0881 328 PANTHER RING-H2 FINGER PROTEIN ATL16 66 276 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0881 Lele-ChrLele44 16768636 16769622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0881 12 309 C3H Transcription Factor Family AT3G03550 42.089 1.11e-68 217