Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0848 ATGCCACCGAGGACGGTGAAGAGAGGGGCTGCAGCGGCGGCCAGGAGAGGGGGCAGAGGTGGTAGAGGAACGCCGAAGGCTGTCCAGAATAAACAGAATCTTGATTCTGTACAAGAGGTTGTGAAGCAGGAAGAAAAGCAGGTGGTTGAGGAGAAGCCCGTTGTCGAGGAGAAACCTGTCGTTGAGGAGAAACCTGTTGTAGAGAAGCAAGTAGGTATTGATATGAATCAGATGGCTTTTGATATTAACCAAGTCGCTTCAGAGGCTGAAGAAGCGAATCCTGTCACAAATAGGTCGTCTGCTGTGAAAAATGACGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAAAAAGATGAACGCTTAGATCTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCAAGATGATGTTCTGGAGGTGGGAGATGAGATAGAGGAAGAACCCGACGAGAATTTAGGTGAAGAGGAGGGTGATATGGTTGAGGAGGAAGTGGAAGACGTTCATGGAGAACTTGAGGGTGAAGAGGATGATGAGCATCCTGGAGAGGAGCATGAGCATGCAGAGATTGCTGATGTAGAAGATGAACACCATGAAAGTTTGAAAGAGAGGAGAAAGCGCAAGGAATTTGAAGTGTTTGTTGGAGGCTTAGATAAAGATGCTACTGAGGGTGATCTGAGGAAGGTTTTTAGTTCAGTTGGTGAGGTTACTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAACAAGGGTTTTGCATTCTTACGATTTGCAACTGTGGAACAAGCTAAACGAGCTGTAACAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGGGTAACCCCCAGTCAGGACAGTGACACCCTCTTTTTAGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCATTATGGAGTTGACAATGTGGAGGACCTGACTTTAGTAGAAGATAGTAATAATGAGGGAATGAATCGTGGGTTTGCCTTTTTAGAATTTTCATCTCGTTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTGGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAGATTATGGCGCAGGTTAAAACTGTATTTATTGATGGTCTGCCTCCGTCATGGGATGAGGATCGCGTACGGGGTCTTCTTAAGAGATATGGAGAGATTGAGAAGATTGAGCTTGCCAGAAACATGCCTTCTGCTAAGAGGAAGGACTTTGGATTTGTTACATTTGATACCCATGATGCTGCTGTGACATGTGCCAAAAGCATTAATAATTCTGAGATAGGTGAAGGAGACAGTAAGGCAAAAGTTAGGGCAAGATTATCGAGACCACTTCAGAGAGGCCATGGAAAACATGGTGGTCGTGGGGACTTTCGGTCAAGCCATGCTTCTGGAAGAGTCACAAGGCCTTCATGGAGTCGACCAGCACCTCGTAGTTTACCTGCCCGTGGTATAAGGGGCATTAGTAGCCGTGTTCCTCCAGTTAGGCCTGTTAGTGCGAGAGATAGACGACCAGCCGTGCCCATGACAGTAAGAGCTAGGCCAGTGGCTCCAGCGGCTAGATCATATGATAGGAGACTGGGTGTTCCTGCACACCCAAAAAGTAGCATGAAGAGGGATTATGGTAGGCGTGAGGATTTGCCACCACCAAGAAGTAGAGTAGCTCCAGATTACAGCTCTCGGGTGGCCTCTGAGAGACGCCCATCTTACAGGGATTATCCTGCCCGTGGCCATACCTACTCTGAGCTTCCTAGAAGTACTTCATCTCGTGTGGCACCTAGGAGGGGTTATGTGGATGATGGCTATGGTCAAAGATTTGAGAGGCCTCCTCCTCCTCCACCCTCACATCCAAGTTACCGTGAAGGACGCCCTCGTGACTATGATACTCTCTCTGGCTCCAAACGCCAATATGCTTCCATAGATGATGTTCCTCCACGATATGCAGACAGTGGTGCTCGCCAATCGAGAGTGCGATTGGACTATGACTATGGTGGTAGTACATCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCTAGTATGGGTTATGGTGGTGGCAGGAGTTCAATGTCAAGTCAAGACTCACATGGGATGTATAGTAGTCGCCAGGGCATGAGTTACGGTGGAGGTTCTTTTGGTGGCAGTGATGTTGGCGGTATGTACTCCAGTTATGGTGGTGATTACATGTCTCGTGGAAATGATGTTGGCGTTACATGGGTGATAGTGGGTCTGGATCTTATTATTAAGATATGA 2373 0.4648 MPPRTVKRGAAAAARRGGRGGRGTPKAVQNKQNLDSVQEVVKQEEKQVVEEKPVVEEKPVVEEKPVVEKQVGIDMNQMAFDINQVASEAEEANPVTNRSSAVKNDEEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIEQDDVLEVGDEIEEEPDENLGEEEGDMVEEEVEDVHGELEGEEDDEHPGEEHEHAEIADVEDEHHESLKERRKRKEFEVFVGGLDKDATEGDLRKVFSSVGEVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRGLLKRYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNSEIGEGDSKAKVRARLSRPLQRGHGKHGGRGDFRSSHASGRVTRPSWSRPAPRSLPARGIRGISSRVPPVRPVSARDRRPAVPMTVRARPVAPAARSYDRRLGVPAHPKSSMKRDYGRREDLPPPRSRVAPDYSSRVASERRPSYRDYPARGHTYSELPRSTSSRVAPRRGYVDDGYGQRFERPPPPPPSHPSYREGRPRDYDTLSGSKRQYASIDDVPPRYADSGARQSRVRLDYDYGGSTSQYGDAYGDRLGRSSMGYGGGRSSMSSQDSHGMYSSRQGMSYGGGSFGGSDVGGMYSSYGGDYMSRGNDVGVTWVIVGLDLIIKI 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0848 790 Gene3D - 390 508 IPR012677 -
Lele44g0848 790 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 156 303 - -
Lele44g0848 790 Coils Coil 99 122 - -
Lele44g0848 790 MobiDBLite consensus disorder prediction 88 217 - -
Lele44g0848 790 CDD RRM_SF 225 296 - -
Lele44g0848 790 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 21 729 - -
Lele44g0848 790 MobiDBLite consensus disorder prediction 719 739 - -
Lele44g0848 790 MobiDBLite consensus disorder prediction 481 692 - -
Lele44g0848 790 SUPERFAMILY RNA-binding domain, RBD 218 301 IPR035979 GO:0003676
Lele44g0848 790 MobiDBLite consensus disorder prediction 724 739 - -
Lele44g0848 790 MobiDBLite consensus disorder prediction 101 117 - -
Lele44g0848 790 Gene3D - 304 386 IPR012677 -
Lele44g0848 790 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 400 482 IPR000504 GO:0003723
Lele44g0848 790 SMART rrm1_1 304 383 IPR000504 GO:0003723
Lele44g0848 790 SMART rrm1_1 401 476 IPR000504 GO:0003723
Lele44g0848 790 SMART rrm1_1 224 297 IPR000504 GO:0003723
Lele44g0848 790 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 371 IPR000504 GO:0003723
Lele44g0848 790 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 293 IPR000504 GO:0003723
Lele44g0848 790 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 402 467 IPR000504 GO:0003723
Lele44g0848 790 FunFam Heterogeneous nuclear ribonucleoprotein Q 304 386 - -
Lele44g0848 790 MobiDBLite consensus disorder prediction 1 33 - -
Lele44g0848 790 FunFam RNA recognition water-stress protein1 390 511 - -
Lele44g0848 790 Coils Coil 27 47 - -
Lele44g0848 790 MobiDBLite consensus disorder prediction 118 193 - -
Lele44g0848 790 CDD RRM_SF 305 372 - -
Lele44g0848 790 MobiDBLite consensus disorder prediction 194 217 - -
Lele44g0848 790 MobiDBLite consensus disorder prediction 565 589 - -
Lele44g0848 790 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 301 IPR000504 GO:0003723
Lele44g0848 790 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 387 IPR000504 GO:0003723
Lele44g0848 790 SUPERFAMILY RNA-binding domain, RBD 301 467 IPR035979 GO:0003676
Lele44g0848 790 CDD RRM_SF 402 467 - -
Lele44g0848 790 Gene3D - 148 303 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0848 Lele-ChrLele44 13810403 13815590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0848 218 481 Eukaryotic Initiation Factors Gene Family AT1G49760 23.411 7.32e-14 73.6