Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0837 ATGAATAATCATCTCCATACTTCTCTCTCTTCCGACGAAACACTCTTATCTCTGCCTCAACCATCGCTTGCCTCTTCTCTATTTTCCAATCCTTCTTCTGTTGATGACGCTGGCTGCACAACAGATTCTCGGCACTCGGTTTCAAATGTTCAGAATTTCGTCGTCCATCAAGTTCGCCCCATAAGATATGGACCTGCTGTCGAAACTTCTCAAGGGACTTCCGCCATGCCTACAATTTTTCATAATACGTGGAGGGACAGTTGGTTGCGTCAAATCAACAACTCATTGCGATGTGAGGTGTGCAAAATTAATCTCAATAGCAAGTGTGTTTTTGAAGACCACATATCAGGGAAGAGACACAAGAAGAACATGCGATTGCACAATAATCCCAGCAACACAATATCATCTGGAACCTCTAATGTGAATTTTCAAATCCAAGGTAGTAGTGTCCAAGGACAAGAGCTATTTGTTGATGCAGGCAAGGATTTAAAACATAAGAAACGGAAGCTTTTGAGTAGGGGTGAAGCAGAGAATGCTGATCAGGTTCACTTGACATCTAATGATGGGATTGGTCGAAAAGGAATCAAGGTTACTCAACCTACACGATGTGAAATTTGCACAATCGATTGTAATACTAAGGATGTTTATATCACACACTTGTCTGGGAAGAAACACCTGAGGAATTTGGAGAAACTATGTAAATCAAAAGGTGATGGTGCCAGTGCTGGTGCTGATGCCAGTGTAGGCGGTGTCACTGCAGCCATTGTAACAGCAAATGATAAGCAACTGGCATCAAATCCAGCTATTGAGTCACAAGAAAAGCCAGACACTAATAAACAAGAATGTATCAATTCATATCAACCAGAAAATGCAGCCATATCAGAAGCTCCAGAAAAGGACAGTGAAACAAAGAAACGGAAGCATGAACTTGAAGGTGGGACTTCTATAACCTCTACCAAGTTTTGCACTCTATCTAATGTCAACAATGAGACTGTCTTTAATTTGCCTGATTGCCCTGCTCGGTGTGAAATTTGCATGATCGACTGCAATAGTAAACATGTCTATATTAGACATTTATCAGGGAAGAAACACAAGAGGAACCTAGAGAAACTATCAAAGTCAAAAAATGATAGGGTCAATGCTAGTGTAGCTGGTGCTGTGGCAGCCATTATAACAGCAAATGATATGCAGCAGACGATGGATCCAACACCTGAGCCATTGGAAAAGTTGGACACAAGTCAACAAGAATTGATCGAATCCCATAAACCAGAAATTGCATTAATGTTAGAAGCGCCAGGAAAGGACATTGAAACAAAGAAACAGAAGCGTGAAATTGAAAGTGAGGCTGGAACCACTACTACCTGCAATCAATTCAATGTCAACAGCGAGGAAGTCCTTAATTTGCCTGATTTCCCTGCTCGATGTGAAATTTGCTTGATCGATTGTAATAGTAAGCATGTATATATTAGACATTTATCAGGTAAGAAACACAAGAGGAACCTGGAGAAAGTATCAAAATCAAAAAGCGATGGAGTAGGTGCTAGTGGAGCAGGTGCTGTTGCAGCCATTATGACGGCAATTGATAAAAATATACAAGGCAAGGAGCATGAAGATTAG 1617 0.4088 MNNHLHTSLSSDETLLSLPQPSLASSLFSNPSSVDDAGCTTDSRHSVSNVQNFVVHQVRPIRYGPAVETSQGTSAMPTIFHNTWRDSWLRQINNSLRCEVCKINLNSKCVFEDHISGKRHKKNMRLHNNPSNTISSGTSNVNFQIQGSSVQGQELFVDAGKDLKHKKRKLLSRGEAENADQVHLTSNDGIGRKGIKVTQPTRCEICTIDCNTKDVYITHLSGKKHLRNLEKLCKSKGDGASAGADASVGGVTAAIVTANDKQLASNPAIESQEKPDTNKQECINSYQPENAAISEAPEKDSETKKRKHELEGGTSITSTKFCTLSNVNNETVFNLPDCPARCEICMIDCNSKHVYIRHLSGKKHKRNLEKLSKSKNDRVNASVAGAVAAIITANDMQQTMDPTPEPLEKLDTSQQELIESHKPEIALMLEAPGKDIETKKQKREIESEAGTTTTCNQFNVNSEEVLNLPDFPARCEICLIDCNSKHVYIRHLSGKKHKRNLEKVSKSKSDGVGASGAGAVAAIMTAIDKNIQGKEHED 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0837 538 MobiDBLite consensus disorder prediction 288 312 - -
Lele44g0837 538 Gene3D Classic Zinc Finger 327 376 - -
Lele44g0837 538 Gene3D Classic Zinc Finger 192 240 - -
Lele44g0837 538 SMART c2h2final6 473 497 IPR013087 -
Lele44g0837 538 SMART c2h2final6 340 364 IPR013087 -
Lele44g0837 538 SMART c2h2final6 96 120 IPR013087 -
Lele44g0837 538 SMART c2h2final6 201 225 IPR013087 -
Lele44g0837 538 MobiDBLite consensus disorder prediction 295 312 - -
Lele44g0837 538 SUPERFAMILY beta-beta-alpha zinc fingers 335 371 IPR036236 -
Lele44g0837 538 Pfam Zinc-finger of C2H2 type 97 120 - -
Lele44g0837 538 Pfam Zinc-finger of C2H2 type 475 497 - -
Lele44g0837 538 Pfam Zinc-finger of C2H2 type 202 225 - -
Lele44g0837 538 Pfam Zinc-finger of C2H2 type 342 364 - -
Lele44g0837 538 PANTHER ZINC FINGER PROTEIN 385B-LIKE 185 377 - -
Lele44g0837 538 SUPERFAMILY beta-beta-alpha zinc fingers 82 127 IPR036236 -
Lele44g0837 538 SUPERFAMILY beta-beta-alpha zinc fingers 193 233 IPR036236 -
Lele44g0837 538 SUPERFAMILY beta-beta-alpha zinc fingers 468 504 IPR036236 -
Lele44g0837 538 Gene3D Classic Zinc Finger 85 129 - -
Lele44g0837 538 Gene3D Classic Zinc Finger 432 504 - -
Lele44g0837 538 SMART ZnF_U1_5 198 232 IPR003604 GO:0003676|GO:0008270
Lele44g0837 538 SMART ZnF_U1_5 470 504 IPR003604 GO:0003676|GO:0008270
Lele44g0837 538 SMART ZnF_U1_5 93 127 IPR003604 GO:0003676|GO:0008270
Lele44g0837 538 SMART ZnF_U1_5 337 371 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0837 Lele-ChrLele44 12238157 12240883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0837 96 368 C2H2 Transcription Factor Family AT5G61190 25.000 2.95e-09 58.2