Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0723 ATGGAGAAGCGTGAGTGCAAGCTCTGCTTCAAAATCTTCGCTAATGGCAGAGCTCTGGGAGGTCACATGAGGTCTCACATGATGAAGAAGCAGCTTCCACAACCTTCAAAACCAGAGGAATCTCGATCACCATCTCCTACCTTACTGAGTTTCGAGGCCGACGACTCGCCTTCTTCTTCTTCTTCATCTGAAGATGAAGGATACAACGGTCTAAATCATGTCGTAAGAGAGAATCCGAAGAGAAGCATTCGCATCGTAGATCCTGAGTTCTCGTTTGTTGTCGATACTAATGGCTCCGTGATTCAAGACAGAGAAAGGGAGACCGAGACCGAGTCATCGGAGAATCCAACTCGGAAACGATCCAAACGCGCTTGGAAACTCGGTAGTTTCTATGACGATGACGATGATCACTACATTCATAAGAAAATTCAGCATCAAGAAACCGTGGAAAAGCTCAAATCGAACGAATTCTGTAAGACCGAGTCGTGGATCACGGAGCCTGAACCGGCGAGTTCGATCTCGGATACGACCACCGAAGAAGACGTCGCCTACTGCCTTATGATGCTTTCCAGAGATAAATGGAAGAGACAAAGCGATCTGACAGACCAATACAACGTCGTGGAGGAAGACGAGGTCAAGGACAAGGACGAGGACGAAGACGCAGACGAAGAAGACGACGACGATGGCGATGAATCCGAGGGGGATTTCAAACCGTTGAAATCCAGAATTCGAGGTAAGTACACGTGTGAGACGTGCAAGAAAGTGTTTCGATCATATCAAGCACTCGGTGGTCACAGAGCAAGTCACAGGAAGATCAAAGTGATGGAGCTCGAGAATCATAATAATGGAGGAGGCCGGACTTCGTCTTCTTCAGTGTTCAAGAAGAAAATTCACGAATGCCCAATCTGTTTCAGAGTGTTCTCTTCGGGTCAAGCTCTTGGGGGACACAAGAGGTCCCATCTAACCGGTTCATCGACATTACCGATCACTCAAGCTTCAACTAAACCGATCGAAAATTTCATAGATCTTAACCTTCCTCCAGCTCCAACGGATGAAGACGAAATCAGCCAAATCGACAATTCTGGAGTTTCAGATGCAGAATTCGTCGTTGATCATCATAGCATCATCAGACAGTGA 1137 0.4688 MEKRECKLCFKIFANGRALGGHMRSHMMKKQLPQPSKPEESRSPSPTLLSFEADDSPSSSSSSEDEGYNGLNHVVRENPKRSIRIVDPEFSFVVDTNGSVIQDRERETETESSENPTRKRSKRAWKLGSFYDDDDDHYIHKKIQHQETVEKLKSNEFCKTESWITEPEPASSISDTTTEEDVAYCLMMLSRDKWKRQSDLTDQYNVVEEDEVKDKDEDEDADEEDDDDGDESEGDFKPLKSRIRGKYTCETCKKVFRSYQALGGHRASHRKIKVMELENHNNGGGRTSSSSVFKKKIHECPICFRVFSSGQALGGHKRSHLTGSSTLPITQASTKPIENFIDLNLPPAPTDEDEISQIDNSGVSDAEFVVDHHSIIRQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0723 378 MobiDBLite consensus disorder prediction 37 68 - -
Lele44g0723 378 SMART c2h2final6 247 269 IPR013087 -
Lele44g0723 378 SMART c2h2final6 4 26 IPR013087 -
Lele44g0723 378 SMART c2h2final6 298 320 IPR013087 -
Lele44g0723 378 Pfam C2H2-type zinc finger 247 271 - -
Lele44g0723 378 Pfam C2H2-type zinc finger 298 321 - -
Lele44g0723 378 Pfam C2H2-type zinc finger 5 27 - -
Lele44g0723 378 Gene3D Classic Zinc Finger 244 320 - -
Lele44g0723 378 MobiDBLite consensus disorder prediction 21 74 - -
Lele44g0723 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lele44g0723 378 ProSitePatterns Zinc finger C2H2 type domain signature. 300 320 IPR013087 -
Lele44g0723 378 MobiDBLite consensus disorder prediction 100 122 - -
Lele44g0723 378 MobiDBLite consensus disorder prediction 211 232 - -
Lele44g0723 378 MobiDBLite consensus disorder prediction 97 122 - -
Lele44g0723 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 320 IPR013087 -
Lele44g0723 378 SUPERFAMILY beta-beta-alpha zinc fingers 247 320 IPR036236 -
Lele44g0723 378 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lele44g0723 378 ProSitePatterns Zinc finger C2H2 type domain signature. 249 269 IPR013087 -
Lele44g0723 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 247 274 IPR013087 -
Lele44g0723 378 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 372 IPR044303 GO:0006355
Lele44g0723 378 MobiDBLite consensus disorder prediction 205 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0723 Lele-ChrLele44 6133403 6134539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0723 1 358 C2H2 Transcription Factor Family AT3G60580 40.385 7.91e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele44g0723 zf-C2H2_6 2.8e-10 CL0361