Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0677 ATGGATAAAGATGCAAGCCCAAAGTCTAGTCAGATATCTGGTGGAAATTATGATGCAAAATTAGTTGAAACAATTAACACTGCCATAGTAGATAGAAGCCCTTCTGTTGGATGGGAAGATATTGCGGGCCTTGAGAAGGCAAAGCAAGCATTAATGGAAATGGTTATTTTGCCAACTAAGAGAAGAGATCTCTTCACTGGTCTTCGAAGGCCTGCTAGAGGTTTGCTGCTCTTTGGTCCCCCGGGTAATGGAAAAACCATGCTTGCCAAAGCAGTAGCTTCAGAATCAGCAGGAACATTTTTTAACGTGTCCGCAGCTTCCTTGACATCGAAATGGGTTGGTGAAGGTGAAAAGCTTGTCCGGACTCTTTTCATGGTAGCTATATCCAGGCAACCATCAGTGATTTTCATTGATGAGATTGACAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGATTAAAATCTGAATTCCTTATCCAGTTTGATGGGGTGAACTCCAATCCTGATGATATTGTAATCGTTATTGGAGCTACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTCGGAGACTGGTAAAGAGAATATACGTACCTTTGCCAGAGGCAAATGTTCGGAGACTTCTACTAAAGCACAAGCTCAAGGGTCACGCGTTCTCATTACCTAGTGGAGATCTAGAAAGGCTTGTAAAAGATACAGAAGGATATTCCGGGAGTGATCTACAAGCCTTGTGTGAAGAAGCGGCAATGATGCCAATACGAGAGCTGGGTTCTGACATCCTAACTGTTAAGCCAAATCAGGTAAGAGGACTGAGATATGAAGATTTTAAGAAGGCAATGAGTGTAATTAGACCCAGTTTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGGTGGAATGAGGAGTTTGGCTCTAACTGA 933 0.4234 MDKDASPKSSQISGGNYDAKLVETINTAIVDRSPSVGWEDIAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESAGTFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVNSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPEANVRRLLLKHKLKGHAFSLPSGDLERLVKDTEGYSGSDLQALCEEAAMMPIRELGSDILTVKPNQVRGLRYEDFKKAMSVIRPSLNKSKWEELERWNEEFGSN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0677 310 Pfam Vps4 C terminal oligomerisation domain 276 308 IPR015415 -
Lele44g0677 310 CDD AAA 60 205 - -
Lele44g0677 310 Pfam ATPase family associated with various cellular activities (AAA) 75 205 IPR003959 GO:0005524|GO:0016887
Lele44g0677 310 FunFam Spastin, putative 34 218 - -
Lele44g0677 310 SMART AAA_5 71 207 IPR003593 -
Lele44g0677 310 Pfam AAA+ lid domain 230 261 IPR041569 -
Lele44g0677 310 Gene3D - 206 288 - -
Lele44g0677 310 PANTHER AAA DOMAIN-CONTAINING 15 309 - -
Lele44g0677 310 FunFam AAA-type ATPase family protein 206 288 - -
Lele44g0677 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 307 IPR027417 -
Lele44g0677 310 ProSitePatterns AAA-protein family signature. 177 196 IPR003960 GO:0005524|GO:0016887
Lele44g0677 310 Gene3D - 34 304 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0677 Lele-ChrLele44 5625735 5637406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0677 34 260 Calmodulin-binding Proteins AT3G56690 42.373 8.70e-48 169