Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele44g0654 | ATGGATGGTATTCATGGGAGTGATTCTCGGATGCACATGGGTGGTGCACAACATCCAATGCATGTAACCTATGTGCCAGAAAATGAACAACATGGATTGGACCACATGAGTGATGGGAATCAGATGGAAGACAATAACAATTGTGGTGATGCTGATGTCAGCAGACATGAGAGTGTAGAAGAAGTTTCCAACCCTGGAAATGTTACCGACGATCATGGTGCAATAATTGAACAAGCTAGTGGTGACCAGCTCACACTGTCTTTTCAAGGCCAGGTTTATGTATTTGACTCTGTGTCGCCGGAAAAGGTTCAAGCTGTACTATTACTATTGGGAGGCCGTGAAGTACCTTCCATGTCTGCAAATCCAATTAATGTTCACCATAATAATCTGGATATGTCTGGGACTCCTGTAAAACTCAGTGTCCCTCAAAGATTAGCCTCATTGATTAGATTTCGAGAAAAGCGGAAAGAACGGAATTTTGAAAAGAAAATACGTTACACTGTTCGTAAAGAAGTAGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACGTCTTCCAAGTCGAACCCTGATGAATCTGCTCCAGCTGCAACAAATTTGGGCACAAATGAAAGCTGGACATCAGACAATATTGGATCCCAACAGCAGGATGTTGTCTGTAGGCACTGTGGCATCAGCGAGAAATGCACACCAATGATGAGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTAAGGGACCTGACAAAAACTCCCTTTCCTGGACACAATTCTTCATTAAATAGGAATGAGGGAGTGCCTGCCTTAAGATGTAAATTAGCTTGCTGGAAAGAAAGAGATGAAGCAGCCTTACACTTCTCGTAG | 900 | 0.4322 | MDGIHGSDSRMHMGGAQHPMHVTYVPENEQHGLDHMSDGNQMEDNNNCGDADVSRHESVEEVSNPGNVTDDHGAIIEQASGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMSANPINVHHNNLDMSGTPVKLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESAPAATNLGTNESWTSDNIGSQQQDVVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPFPGHNSSLNRNEGVPALRCKLACWKERDEAALHFS | 299 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele44g0654 | 299 | ProSitePatterns | GATA-type zinc finger domain. | 220 | 247 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele44g0654 | 299 | ProSiteProfiles | Tify domain profile. | 77 | 112 | IPR010399 | - | |
| Lele44g0654 | 299 | MobiDBLite | consensus disorder prediction | 177 | 208 | - | - | |
| Lele44g0654 | 299 | CDD | ZnF_GATA | 219 | 267 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele44g0654 | 299 | Pfam | GATA zinc finger | 220 | 256 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele44g0654 | 299 | MobiDBLite | consensus disorder prediction | 178 | 208 | - | - | |
| Lele44g0654 | 299 | Pfam | CCT motif | 144 | 186 | IPR010402 | GO:0005515 | |
| Lele44g0654 | 299 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 215 | 264 | - | - | |
| Lele44g0654 | 299 | SMART | tify_2 | 77 | 112 | IPR010399 | - | |
| Lele44g0654 | 299 | ProSiteProfiles | CCT domain profile. | 144 | 186 | IPR010402 | GO:0005515 | |
| Lele44g0654 | 299 | ProSiteProfiles | GATA-type zinc finger domain profile. | 214 | 262 | IPR000679 | GO:0006355|GO:0043565 | |
| Lele44g0654 | 299 | Gene3D | - | 211 | 272 | IPR013088 | GO:0006355|GO:0008270 | |
| Lele44g0654 | 299 | MobiDBLite | consensus disorder prediction | 35 | 56 | - | - | |
| Lele44g0654 | 299 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 26 | 266 | IPR045280 | GO:0006355 | |
| Lele44g0654 | 299 | Pfam | tify domain | 80 | 111 | IPR010399 | - | |
| Lele44g0654 | 299 | SMART | GATA_3 | 214 | 267 | IPR000679 | GO:0006355|GO:0043565 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele44g0654 | Lele-ChrLele44 | 5332646 | 5337765 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele44g0654 | 1 | 276 | Tify Gene Family | AT1G51600 | 59.859 | 5.38e-114 | 329 |
Transcription factors information