Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0617 ATGGCTGTCACTGGTTCAGCATCTAGACAGCCGCAATTCATTATGAGCACTGGAAATCGAAGCTCTTCCGATGCTCCTCTCATCGAAAACTCCGACACTGATCAGATTGTCGTCCCTGATAAAACAAGCTGGAAGAACTTATTTGCATATATGGGTCCCGGGTTTCTGGTTTCTATTGCATATATAGACCCAGGAAACTTTGAAACGGATCTTCAGTCAGGGGCACAATATAAATATGAGTTACTTTGGATTATATTGGTGGCCTCTTGTGCTGCTCTTATAATTCAATCAATGGCAGCCAATTTAGGAGTTGTAACCGGAAAACATTTAGCAGAGCATTGTAGAAATGAGTATCCTCGGTCAACAAACTTTGTCTTGTGGGTTATTGCTGAAATTGCCATAGTGGCTTGTGACATTCCTGAAGTGATCGGAACAGCCTTCGCGTTGAACATGCTCTTCAACATACCTGTTTGGATCGGTGTTCTTTTAACAGGGCTCAGTACACTGATCCTCTTAGCATTACAGCAATATGGGGTGAGGAAACTTGAGTTCTTGATTGCATTTCTGGTGTTTACAATTGCTGCGTGCTTTTTTGTTGAACTTGGGTACGCGAAGCCTGATGCTAAAGAAGTTTTGGAGGGTCTTTTTATACCGAAACTCAAAGGGAATGGTGCTACTGGTCTTGCAATTTCACTCCTGGGGGCTATGGTTATGCCGCACAACCTCTTTCTCCACTCGGCATTGGTGCTCTCTAGAAAAATACCGCGATCAGTTCATGGAATCAAAGAGGCTTGCAGATTTTACATGATAGAAAGTGCCTTTGCTCTTATGGTGGCTTTCCTCATAAATGTTTCTGTTATCTCCGTGAGTGGCGCAGTTTGCAATTCCTCGAATTTGAATGCGGAAGATCAAGAGAGCTGTCAGGATTTGGACTTGAACAAAGCCTCCTTTCTACTAAAAAATGTACTCGGTAAATGGAGTTCAAAACTGTTCGCAATCGCTTTGCTTGCTTCGGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTCATGCAGGGATTTCTTGACTTGCGTCTGAAACCGTGGATTCGAAATTTTTTGACTCGCTGTTTAGCCATAGTCCCTAGTTTAATTGTTGCTGTCATCGGTGGCTCTGCTGGGGCGGGGAAGCTCATCATTATTGCATCGATGATCTTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTTCTCAAGTTCACTAGCAGCAAAACCAAGATGGGCGCTCACGCCAACTCATTCACGGTATCGGTATTGACATGGATCATCGGTTCGCTGATAATGGCGATAAATATATACTACTTACTGACGGGCTTCGTGAAGTTGCTTCTTCATAGTGACTTGGAAATTGTGGGTAAGGTGTTTGTTGGGATATTAGGGTTTTCAGCCATAGCGGTATATTTGGCCGGGATCGCTTATCTGGTGTTTCGCAAGAACAAGAAGGAAACACGCCTTCTGGCACTAACAACGCCTGAAAATGGGCAAATGGGAAATGAACAAGGCAATGGATCAATGTATAGTCTCCCAAGAGAAGACATAGTTAGCATGCAATTGCCTCAGAGAAGTTACTTAGCTGATCTCTGA 1632 0.4332 MAVTGSASRQPQFIMSTGNRSSSDAPLIENSDTDQIVVPDKTSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSMAANLGVVTGKHLAEHCRNEYPRSTNFVLWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFFVELGYAKPDAKEVLEGLFIPKLKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVHGIKEACRFYMIESAFALMVAFLINVSVISVSGAVCNSSNLNAEDQESCQDLDLNKASFLLKNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKPWIRNFLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALIPLLKFTSSKTKMGAHANSFTVSVLTWIIGSLIMAINIYYLLTGFVKLLLHSDLEIVGKVFVGILGFSAIAVYLAGIAYLVFRKNKKETRLLALTTPENGQMGNEQGNGSMYSLPREDIVSMQLPQRSYLADL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0617 543 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 23 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 MobiDBLite consensus disorder prediction 1 26 - -
Lele44g0617 543 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele44g0617 543 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0617 Lele-ChrLele44 4841255 4845205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0617 16 537 Inorganic Solute Cotransporters AT1G15960 79.962 0.0 863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0728 41 17222849 17224928 Lele44g0617 44 4841255 4845205 hybridization
Lele42g0725 42 20300915 20304960 Lele44g0617 44 4841255 4845205 hybridization