Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0615 ATGGGGGATTTGAAAAGAAGTAGAGCTCAATTTCCAATAAGAAAATGTCGGGGTATGAATATTCTGCTTTCAGATGAACAAGAGGGCTTGATATGTCTTGCTCACTTTTTTATGAATTGTTTCCTTTGCAGAGAAGAGGCTGTTGTTGCTGCTGAGGCAGCTGCACCAATTGTAGGTGAGCCAATGGACATCATGACTGCCTTGCAGCTTGTGCTGAGAAAATCACTGGCTTATGGTGGTCTCGCTCGTGGCCTTCATGAAGGCGCAAAGATTATTGAAAAGCATGCTGCTCAGCTCTGTGTTCTCGCAGAGGATTGTGACCAACCCGACTATGTAAAGCTGGTCAAAGCCCTATGTGCTGAGCACAGTGTTAGCTTGCTGACAGTTGCAAGCGCAAAAACCCTCGGAGAGTGGGCCGGTTTGTGTAAGATCGACTCGGAAGGGAAGGCGAGAAAGGTGGTTGGTTGCTCGTGTGTGGTTATCAAGGATTTCGGAGAGGAACATGAAGCCTATAACGTTGTTTTGCAGCATGTTAAAGCTCACTGA 546 0.467 MGDLKRSRAQFPIRKCRGMNILLSDEQEGLICLAHFFMNCFLCREEAVVAAEAAAPIVGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKIIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHSVSLLTVASAKTLGEWAGLCKIDSEGKARKVVGCSCVVIKDFGEEHEAYNVVLQHVKAH 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0615 181 PANTHER 40S RIBOSOMAL PROTEIN S12 56 181 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele44g0615 181 PRINTS Ribosomal protein S12E family signature 85 101 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele44g0615 181 PRINTS Ribosomal protein S12E family signature 71 84 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele44g0615 181 PRINTS Ribosomal protein S12E family signature 126 147 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele44g0615 181 PRINTS Ribosomal protein S12E family signature 151 164 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele44g0615 181 ProSitePatterns Ribosomal protein S12e signature. 67 85 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lele44g0615 181 SUPERFAMILY L30e-like 61 179 IPR029064 -
Lele44g0615 181 Gene3D - 47 181 IPR029064 -
Lele44g0615 181 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 67 160 IPR004038 -
Lele44g0615 181 FunFam 40S ribosomal protein S12 48 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0615 Lele-ChrLele44 4817012 4818671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0615 58 181 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 74.194 4.49e-65 194