LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele44g0605	ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCCTGGGTCTCCGAAATCCGCCACCCTCTTCTGAAGACAAGAATATGGCTAGGGACGTTCGAAACGGCGGAGGATGCAGCCAGAGCTTATGACGAAGCGGCGAGGCTTATGTGTGGAACAAAGGCAAGAACCAATTTTCCGTTTAATCCCAATGAGCCACAGTCGTCTTCTTCAAAGTATCTCTCTGCAACTTTGACGGCGAAGCTTCACAAGTGCCACATGGCGTCACTTTCTCTTCAAATGGCTAATAAACAGAGCCAGAAACAGCCACAACAACAACAACCTCAGAGGCTTAAATATAATGACAATAGCAACAACCCATGTGCCTCCGGCAATGCAACTGCAGGAACGAGTTCTGACGCGGGATTCCGGTGGCCGGAGATGAGACCTGAGGAATCCCAATGGGTGGTAGAAGGCCAAGGCGAAGAAGTTGGACCAGTACTTGAAGATGATCATATTGAGCAGATGATTCAGGAATTGCTTCATTATGGCTCCATTGAACTCTGTTCTCTTGGCTCAGCCTAG	576	0.5	MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGTKARTNFPFNPNEPQSSSSKYLSATLTAKLHKCHMASLSLQMANKQSQKQPQQQQPQRLKYNDNSNNPCASGNATAGTSSDAGFRWPEMRPEESQWVVEGQGEEVGPVLEDDHIEQMIQELLHYGSIELCSLGSA	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele44g0605	191	MobiDBLite	consensus disorder prediction	98	136	-	-
	Lele44g0605	191	SMART	rav1_2	7	70	IPR001471	GO:0003700\|GO:0006355
	Lele44g0605	191	MobiDBLite	consensus disorder prediction	98	142	-	-
	Lele44g0605	191	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	6	130	-	-
	Lele44g0605	191	SUPERFAMILY	DNA-binding domain	7	65	IPR016177	GO:0003677
	Lele44g0605	191	FunFam	Ethylene-responsive transcription factor 2	6	66	-	-
	Lele44g0605	191	PRINTS	Ethylene responsive element binding protein signature	30	46	IPR001471	GO:0003700\|GO:0006355
	Lele44g0605	191	PRINTS	Ethylene responsive element binding protein signature	8	19	IPR001471	GO:0003700\|GO:0006355
	Lele44g0605	191	Pfam	AP2 domain	7	56	IPR001471	GO:0003700\|GO:0006355
	Lele44g0605	191	CDD	AP2	6	64	IPR001471	GO:0003700\|GO:0006355
	Lele44g0605	191	Gene3D	AP2/ERF domain	6	65	IPR036955	GO:0003700\|GO:0006355
	Lele44g0605	191	ProSiteProfiles	AP2/ERF domain profile.	7	64	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele44g0605	Lele-ChrLele44	4728289	4728955	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele44g0605	1	188	AP2-EREBP Transcription Factor Family	AT5G25190	60.106	6.79e-71	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele44g0605		AP2	1.1e-11	CL0081