Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0586 ATGGATGCTCAGAAGGTTCTTGAACGAGAAGGGAAATCTTCCTTCACGGTTGATGACGATTGGGAGAAGTCAAGAGTGGCGGAAGCTAAACCAAGTCTTCTGGTTAAGGCTTCCCAATTGAAACGGGATCAACCTGAAATTAGTCCGACAGAGCAGGTTGTTCGACAGGAAAAGGAGATGATTGAGAACTTATCTGATCGAAAATACCAAATGTCTGTTCGAGAATTGGCTAAGGGAATCACTTATACAGAGCCTTTGCCTACAGGATGGAAGCCACCTTTACCCATTAGAAGAATGTCTAAAAAGCAACGTGATTTGATTCGGAAGCAGTGGCATATAATAGTTGACGGTGAAGATATCCCACCTCCAATTAAGAATTTCAAGGATATGAGGTTTCCTGAGTCAATTTTGAACAAGTTGAAAGTCAAAGGGATTGTGCAGCCAACACCTATTCAAGTGCAAGGCCTTCCTGTGATCTTATCTGGGAGGGATATGATTGGGATTGCATTCACCGGATCAGGAAAACTCGTCTTTGCCTTTGCTTTGTATTGGTGGAGTGGAAATGAGATCTCAGCTAGATGTTGTGAAGAGGGTGTTCATATTGTTGTTGCGACCCCCGGGAAGTTGAAGGATATGCTGGCAAAGAAAAAAATGAACCTTGATAGTTGCAGGTATTTAACATTAGGTGAGGCTGATAGATTGGTAGATTTGGGATTCGAAGATGACATAAGAGAAGTGTTTGATCACTTGAAAGCTCAAAAGCAGACTCTCTTATTTTCTGCCACCATGCCGACTAAGATTCAGAATTTTGCTAGAAATGCCGTAGTGAAACCTGTTATTGTCAATGTGGGGCAAGCAGGGGCAGCAAATCTTGATGTAATCCAGAAAGTGGAGTATGTTAAGCAAGAGGCGAAAATAGTTTATTGGCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAACAAAGCAGATGTGGATGGCATTCATGAATATCTTCTCCTGAAAGGAGTTGGAGCAGTGGCTGTTCATGGAGGCAAATATCAGGAAGAAAGAGAGATTGGTCGAACTGGAAGATGTGGCAAGACAGGCATAGCAACAACATTCATAAACAAGAATCAAAGTGAGACAACATTGCTTGATTTGAAACATCTGTTGCAAGAAGCAAAACAGCGCATTGTTTTAGCAGATTTGAATGATCCAAGGGATGATGATGATGAAATCACTGGTAAAAGTGGGGTCAAGGGTTGTGCCTATTGTGGTGGGCTTGGTCACCGCATTCGCGACTGTCCCAAGCTAGAACATCAGAAAAGCATGGCCATTGCATATGGCAGAAGGGACTATTTTGGTTCTGGCGGATATAGGGGAGAGATCTGA 1389 0.4276 MDAQKVLEREGKSSFTVDDDWEKSRVAEAKPSLLVKASQLKRDQPEISPTEQVVRQEKEMIENLSDRKYQMSVRELAKGITYTEPLPTGWKPPLPIRRMSKKQRDLIRKQWHIIVDGEDIPPPIKNFKDMRFPESILNKLKVKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKLVFAFALYWWSGNEISARCCEEGVHIVVATPGKLKDMLAKKKMNLDSCRYLTLGEADRLVDLGFEDDIREVFDHLKAQKQTLLFSATMPTKIQNFARNAVVKPVIVNVGQAGAANLDVIQKVEYVKQEAKIVYWLECLQKTPPPVLIFCENKADVDGIHEYLLLKGVGAVAVHGGKYQEEREIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIVLADLNDPRDDDDEITGKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAYGRRDYFGSGGYRGEI 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0586 462 Coils Coil 376 396 - -
Lele44g0586 462 Gene3D - 291 357 IPR027417 -
Lele44g0586 462 Gene3D - 358 402 IPR027417 -
Lele44g0586 462 SUPERFAMILY Retrovirus zinc finger-like domains 420 441 IPR036875 GO:0003676|GO:0008270
Lele44g0586 462 SMART ultradead3 144 296 IPR014001 -
Lele44g0586 462 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Lele44g0586 462 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 358 397 - -
Lele44g0586 462 Pfam DEAD/DEAH box helicase 196 269 IPR011545 GO:0003676|GO:0005524
Lele44g0586 462 Pfam Zinc knuckle 420 436 IPR001878 GO:0003676|GO:0008270
Lele44g0586 462 Gene3D - 185 287 IPR027417 -
Lele44g0586 462 SMART c2hcfinal6 420 436 IPR001878 GO:0003676|GO:0008270
Lele44g0586 462 ProSiteProfiles Zinc finger CCHC-type profile. 421 436 IPR001878 GO:0003676|GO:0008270
Lele44g0586 462 Gene3D - 94 184 IPR027417 -
Lele44g0586 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 284 IPR027417 -
Lele44g0586 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 381 IPR027417 -
Lele44g0586 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 281 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0586 Lele-ChrLele44 4543417 4545120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0586 113 372 Eukaryotic Initiation Factors Gene Family AT3G19760 25.890 1.15e-19 89.0