Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0573 ATGTGGAACAATGGTCAGATTGCTCCACCAGGAACAACTGGCTCTTCCATTCCACCGCCTCCTGCAGCTCAACCGTCGTACACGGTGCTGCCGCCTCCCCCGCCTCCAGACCCGGCTGAGACCGAGGCTGATGCTGAGGCAAAGCTCGAGGAGAAGGCTAGGAAATGGCAGCAGCTTAATTCGAAGCGGTACAGTGATAAGAGAAAATTTGGGTTTGTTGAGACGCAGAAGGAGGATATGCCCCCCGAACATGTTCGGAAAATCATCAGGGATCATGGGGATATGTCCTCAAAAAAATACCGTCATGACAAACGTGTTTATCTTGGAGCGCTTAAATTTATTCCACATGCAGTTTACAAGCTCCTGGAGAATATGCCTATGCCATGGGAGCAGGTCCGAGACGTGAAGGTCTTGTACCATATATCTGGGGCAATTACTTTTGTTAATGAAATACCATGGGTTGTCGAGCCAATATATCTTGCACAGTGGGGTACTATGTGGATCATGATGAGAAGGGAGAAGAGGGATCGTCGCCATTTCAAGAGGATGCGGTTTCCCCCATTTGATGATGAGGAGCCTCCGTTAGATTATGCTGATAATTTGTTAGATGTTGATCCTCTGGAGCCTATTCAGCTTGAATTGGATGAAGAGGAAGATTCTGCTGTATATACTTGGTTTTATGATCATAAACCTCTTGTGAAAACAAAGCTTATAAATGGTCCTAGCTATCGGAAATGGCATCTTTCCCTTCCAATTATGGCCACTCTGCATAGACTTGCAGGACAGCTGTTGTCTGATTTGATTGACCGGAATTATTTCTACTTGTTTGACATGGAGTCATTCTTTACAGCGAAGGCATTGAACATGTGCATACCTGGTGGTCCTAAGTTTGAGCCCCTTTACCGTGACATGGAGAAGGGAGATGAGGACTGGAATGAGTTTAATGACATCAACAAACTTATTATCAGGTCACCTCTAAGGACAGAGTACAGAATTGCGTTTCCTCATCTCTATAACAACAGGCCTCGCAAAGTAAAGCTTTGTGTGTACCACACTCCAATGGTCATGTACATAAAAACTGAAGATCCTGATCTACCTGCATTTTATTATGATCCATTGATACATCCGATAACTAGTGCCAGCAAGGAGCGGCGTGAGAAGAGAACTCATGAGGAAGAGGATGAGGAGTGGGAATTGCCAGAAGGTGTGGAACCTTTGCTTAAAGATACACAGCTTTACACAGATACCACTGCTGCTGGTATCTCCCTACTATTTGCTCCTCGTCCGTTTAACATGAGATCTGGTCGCACGCGGCGTGCAGAAGATATTCCCCTTGTGTCAGAATGGTATAAGGAGCATTGTCCTCCTTCATATCCAGTTAAAGTTAGAGTTAGTTATCAGAAGTTGCTGAAATGTTTTGTGTTGAATGAGCTGCATCATAGACCTCCTAAGGCTCAGAAAAAGAAGCACCTATTTAGATCTCTTCAAGCGACCAAGTTTTTCCAAACCACTGAACTTGATTGGGTTGAAGCAGGTCTTCAAGTTTGCAGGCAGGGTTATAATATGTTGAATCTTTTGATACATAGAAAAAATTTGAATTATCTTCATCTTGATTACAATTTCAATCTAAAGCCTGTTAAAACCCTTACTACGAAAGAAAGGAAGAAATCACGGTTTGGAAATGCTTTCCATCTTTGCCGTGAAATTCTCCGTTTGACTAAGCTTGTGGTAGATGCCAATGTCCAGTTTCGTCTGGGTAATGTGGATGCATTCCAACTGGCTGATGGTTTGCAGTATACTTTCTCTCATGTTGGTCAGTTGACTGGTATGTATCGGTACAAGTACAGGCTTATGCGGCAAATTAGAATGTGCAAAGACTTGAAGCACTTGATTTACTATCGGTTTAACACCGGGCCTGTTGGGAAAGGGCCTGGCTGTGGAATTTGGGCTCCAATGTGGAGAGTTTGGTTGTTCTTTCTTCGTGGTATTGTTCCGCTTCTTGAAAGATGGTTAGGCAATTTACTTGCACGGCAGTTTGAGGGACGCCACTCAAAAGGTGTGGCCAAGACTGTTACTAAGCAGCGTGTTGAGAGCCACTTTGACTTAGAGCTTCGAGCAGCAGTTATGCATGATGTGCTTGATGCCATGCCTGAGGGCATTAAGCAGAATAAGGCCAGGACAATATTGCAGCATTTGAGTGAGGCTTGGCGCTGCTGGAAAGCAAATATTCCTTGGAAGGTTCCTGGTCTGCCAGTTCCCATAGAAAACATGATCCTCCGTTATGTGAAGTCTAAAGCAGACTGGTGGACAAATGTTGCCCATTATAATCGTGAACGTATCAGAAGAGGGGCAACTGTTGATAAGACTGTATGTCGTAAAAATCTGGGACGATTGACACGACTATGGCTGAAGGCAGAGCAGGAACGGCAACACAATTATTTGAAAGATGGTCCATATGTTACTCCTGAAGAAGCTGTAGCTATCTATACGACCACAGTTCATTGGTTGGAATCAAGGAAGTTCTCCCCTATTCCGTTCCCTCCTTTGTCTTACAAGCATGATACTAAGTTGCTAATTCTTGCTCTTGAGAGGTTGAAAGAATCCTACAGTGTTGCAGTGAGGTTGAATCAACTGCAAAGAGAAGAGTTGGGGCTGATTGAACAAGCTTATGACAATCCACATGAGGCTCTATCAAGAATCAAGCGACACCTTCTCACCCAGCGTGCTTTCAAAGAAGTTGGGATAGAATTTATGGATTTATATAGCTACTTGATTCCAGTTTATGAGATAGAGCCTCTTGAGAAGATTACAGACGCCTATCTTGATCAGTATTTATGGTATGAAGGTGATAAGCGCCATCTCTTTCCCAACTGGATAAAGCCAGCAGATTCAGAGCCGCCACCACTTTTGGTTTATAAATGGTGTCAGGGTATAAACAATCTGCAAGGTATATGGGATACCAGTGAGGGCCAGTGTGTTGTGATGCTGCAGACTAAGTTTGAGAAGTTCTTTGACAAAATTGATTTAACAATGCTAAACAGGCTTCTCCGTCTGGTTCTTGACCATAATATTGCTGATTATGTCACTGCAAAAAACAATGTTGTCTTATCATACAAAGATATGAGCCATACAAATTCATACGGTCTTATACGTGGTCTGCAGTTTGCATCATTTGTTGTCCAATATTATGGACTCGTGCTAGATTTGTTGCTTCTTGGACTTACTAGAGCCAGTGAAATTGCTGGCCCGCCACAGATGCCTAATGAATTCATCACTTACTGGGACACAAAAGTTGAGACAAGGCATCCAATTAGGCTTTATTCTCGGTACATAGATCGGGTTCATATATTATTTCGCTTTACTCATGAGGAGGCTCGAGACCTCATACAGCGTTACCTCACTGAGCATCCTGATCCTAACAATGAGAATATGGTGGGCTACAACAATAAGAAGTGCTGGCCAAGAGATGCAAGAATGAGGCTCATGAAACACGATGTCAATCTTGGGAGAAGTGTCTTCTGGGATATGAAGAACCGTCTTCCTCGAAGTATAACAACTTTAGAGTGGGAGAACAGCTTTGTTTCTGTTTACAGCAAGGATAATCCAAACTTGCTTTTCAGCATGTGTGGATTTGAAGTACGGATACTCCCTAAAATTCGAATGACTCAAGAAGCATTCAGCAATACAAGAGATGGTGTTTGGAATTTACAAAATGAACAGACCAAAGAAAGGACGGCAGTTGCCTTTTTAAGAGTTGATGATGAACACATGAAAGTGTTTGAGAATCGGGTTAGGCAGATTCTCATGTCTTCCGGATCTACTACTTTTACAAAAATTGTCAATAAATGGAACACCGCTTTGATAGGTCTTATGACATACTTTCGGGAGGCAACTGTACACACTCAAGAGCTGTTAGATTTGCTGGTTAAATGTGAAAATAAGATTCAGACTCGTATTAAGATTGGATTGAACTCAAAGATGCCTAGCAGATTTCCTCCTGTCATTTTCTACACCCCAAAAGAAATTGGAGGACTTGGTATGTTGTCCATGGGTCACATTTTGATTCCACAAAGCGATCTCCGGTACAGTCAGCAGACTGATGTTGGCGTGACACACTTCAGGAGTGGGATGAGTCATGAAGAGGACCAGTTGATTCCCAACCTTTATCGATATATTCAGCCTTGGGAGAGTGAATTCATTGACTCACAGCGTGTCTGGGCCGAATATGCATTGAAGAGGCAGGAGGCACAAGCACAAAATAGGCGTCTGACCCTTGAAGATCTGGAAGATTCATGGGATAGAGGTATACCACGTATAAACACTTTATTCCAAAAGGATAGACACACCTTGGCTTATGATAAAGGATGGAGGGTGCGTACCGACTTCAAGCAGTACCAGGTTCTGAAACAAAACCCTTTCTGGTGGACACACCAGAGGCATGATGGGAAGTTGTGGAACTTGAACAATTACCGTACTGATGTTATTCAAGCCCTTGGAGGTGTTGAAGGAATTCTTGAACATACTTTATTCAAAGGAACATACTTTCCAACCTGGGAAGGTCTGTTTTGGGAAAAGGCATCAGGCTTTGAGGAATCTATGAAGTACAAGAAGTTAACAAATGCTCAGAGATCTGGTCTCAACCAGATACCTAACCGTAGGTTTACTCTTTGGTGGTCACCAACCATAAATCGAGCCAATGTTTATGTGGGGTTCCAGGTGCAGTTAGATCTGACTGGTATTTTCATGCATGGGAAGATACCTACTTTGAAGATATCACTTATTCAGATATTCCGAGCCCATTTGTGGCAGAAGATCCATGAGAGTGTTGTCATGGATCTGTGTCAGGTTTTGGATCAGGAATTGGATGCTCTGGAGATTGAGACTGTCCAGAAGGAAACAATCCATCCAAGGAAAAGTTACAAAATGAACAGCTCTTGTGCAGATGTCCTTCTGTTTGCTGCCCATCGATGGCCAATGTCAAAGCCTAGTCTAGTAGCTGAATCTAAGGATGTTTTTGATCAGAAGGCAAGCAATAAATACTGGATTGATGTACAGCTTAGATGGGGGGATTATGACTCTCATGATATTGAGCGTTACACACGGGCCAAATTTATGGATTATACAACAGATAATATGTCTATATATCCATCTCCTACAGGGGTGATGATTGGCATTGATTTGGCTTATAACTTGCACTCTGCATTTGGCAACTGGTTCCCTGGTTCAAAGCCACTGCTTCAGCAGGCCATGAACAAGATCATGAAGTCAAATCCTGCGTTATATGTCTTGAGAGAGCGTATAAGGAAAGGGCTTCAGTTGTATTCTTCTGAGCCTACAGAACCATACTTGTCATCCCAAAACTATGGAGAAATATTCAGCAATCAGATTATATGGTTTGTTGATGACACTAATGTGTACCGTGTTACAATCCATAAGACATTTGAAGGAAATCTTACAACAAAGCCCATCAATGGTGCCATCTTCATTTTTAATCCAAGGACTGGCCAATTGTTTCTGAAGGTTATTCATACAAGTGTTTGGGCTGGTCAGAAGCGTCTTGGTCAGCTGGCCAAGTGGAAAACAGCAGAAGAAGTTGCTGCTCTTGTACGTTCTTTGCCAGTTGAAGAACAACCCAAGCAAATTATTGTCACTCGTAAAGGAATGTTGGATCCTTTAGAGGTTCACCTTCTGGATTTCCCCAACATCGTTATTAAAGGAAGTGAGCTGCAACTTCCATTCCAAGCATGCTTGAAGATTGAGAAATTTGGGGATCTTATTTTGAAAGCTACAGAACCTCAAATGGTTTTGTTCAACATTTATGATGACTGGCTGAAAAGTATTTCATCTTACACCGCATTCTCCAGGTTGATTTTGATTCTCCGTGCTCTTCACGTGAATAATGAGAAGGCGAAGATGCTGCTAAAGCCTGACAAAACAATTATTACTGAACCACATCACATCTGGCCTTCTCTCAGTGATGACCAGTGGATGAAGGTGGAGGTTGCATTAAGAGATCTCATACTCTCAGATTATGCCAAAAAGAACAATGTCAACACATCTGCCTTGACTCAGTCTGAGATTCGTGACATTATACTTGGAGCTGAGATTACTCCACCTTCTCAACAGCGGCAACAGATAGCAGAGATTGAGAAACAGGCTAAAGAAGCCAGCCAACTGACAGCTGTAACAACAAAGACGACTAATGTTCATGGTGACGAGCTTATTGTCACCACCACTAGTCCCTATGAGCAGGCTGCATTTGGTTCTAAGACTGACTGGCGTGTCAGAGCAATTTCAGCCACAAATCTGTACCTTCGTGTTAATCATATTTATGTGAACTCTGAGGATATAAAGGAAACTGGTTACACCTACATCATGCCCAAGAACATTTTGAAGAAGTTTATCTGCATAGCTGATCTTCGAACTCAAATTGCTGGCTACCTGTATGGTATAAGTCCTCCAGACAACCCACAGGTTAAAGAGATCCGCTGCATTGTGATGGCACCACAATGGGGGACTCATCAGCAAGTCCATCTCCCATCAGCTCTTCCAGAGCATGATTTCTTGAATGACTTGGAGCCTTTGGGATGGATGCATACTCAACCAAACGAACTTCCACAGTTGTCTCCTCAGGATCTCACTTCACATGCTAAGGTCCTAGAGAACAACAAGCAATGGGACGGCGAGAAGTGCATTATCTTGACTTGCAGTTTTACTCCAGGGTCTTGTTCATTAACGGCATACAAGCTCACTCCATCTGGGTATGAGTGGGGACGTGTCAATAAGGATAGTGGAAGCAATCCTCATGGTTACCTTCCTACTCACTATGAGAAGGTTCAGATGCTTCTCAGCGATCGCTTCTATGGTTTCTATATGGTTCCTGATAATGGACCGTGGAATTACAACTTCATGGGGGTGAGACACGCATCCGGGATGAAGTATGGAGTGAAGTTGGGGACACCTCGAGAGTATTACCATGAAGATCACAGACCAACTCATTTCTTAGAGTTCAGCAACATGGAGGAAGGGGAAACAATTGCCGAGGGAGATCGCGAGGATACATTTACTTGA 7071 0.4305 MWNNGQIAPPGTTGSSIPPPPAAQPSYTVLPPPPPPDPAETEADAEAKLEEKARKWQQLNSKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPWEQVRDVKVLYHISGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFYYDPLIHPITSASKERREKRTHEEEDEEWELPEGVEPLLKDTQLYTDTTAAGISLLFAPRPFNMRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWVEAGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGIWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFDKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIVMAPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKVLENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDSGSNPHGYLPTHYEKVQMLLSDRFYGFYMVPDNGPWNYNFMGVRHASGMKYGVKLGTPREYYHEDHRPTHFLEFSNMEEGETIAEGDREDTFT 2356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0573 2356 Gene3D - 1601 1772 - -
Lele44g0573 2356 MobiDBLite consensus disorder prediction 13 40 - -
Lele44g0573 2356 CDD RNase_H_like_Prp8_IV 1786 2036 IPR021983 -
Lele44g0573 2356 FunFam Pre-mRNA-processing-splicing factor 8 1942 2040 - -
Lele44g0573 2356 Pfam PROCN (NUC071) domain 415 820 IPR012592 GO:0000398
Lele44g0573 2356 Gene3D Cytidine Deaminase, domain 2 2078 2356 - -
Lele44g0573 2356 SUPERFAMILY Ribonuclease H-like 1783 2035 IPR012337 -
Lele44g0573 2356 SUPERFAMILY Ribonuclease H-like 1016 1273 IPR012337 -
Lele44g0573 2356 Pfam PRO8NT (NUC069), PrP8 N-terminal domain 77 228 IPR012591 GO:0000398
Lele44g0573 2356 PANTHER PRE-MRNA SPLICING FACTOR PRP8 40 2344 IPR027652 GO:0000398|GO:0005681
Lele44g0573 2356 MobiDBLite consensus disorder prediction 1 53 - -
Lele44g0573 2356 Pfam U6-snRNA interacting domain of PrP8 1462 1620 IPR019580 GO:0017070
Lele44g0573 2356 Gene3D - 1942 2040 IPR043173 -
Lele44g0573 2356 Pfam PROCT (NUC072) domain 2232 2353 IPR012984 -
Lele44g0573 2356 FunFam Pre-mRNA-processing-splicing factor 8 2078 2356 - -
Lele44g0573 2356 FunFam Pre-mRNA-processing-splicing factor 8 1789 1941 - -
Lele44g0573 2356 FunFam Pre-mRNA-processing-splicing factor 8 1203 1323 - -
Lele44g0573 2356 Pfam PRP8 domain IV core 1780 2009 IPR021983 -
Lele44g0573 2356 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 2121 2219 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele44g0573 2356 Coils Coil 1411 1431 - -
Lele44g0573 2356 Gene3D - 1781 1941 IPR043172 -
Lele44g0573 2356 FunFam Pre-mRNA-processing-splicing factor 8 1601 1772 - -
Lele44g0573 2356 CDD MPN_PRP8 2087 2337 - -
Lele44g0573 2356 Pfam RNA recognition motif of the spliceosomal PrP8 1005 1095 IPR019582 GO:0003723
Lele44g0573 2356 ProSiteProfiles MPN domain profile. 2123 2254 IPR037518 -
Lele44g0573 2356 SMART pad1_6 2119 2253 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele44g0573 2356 Gene3D - 1203 1323 IPR042516 -
Lele44g0573 2356 Pfam U5-snRNA binding site 2 of PrP8 1230 1363 IPR019581 GO:0030623
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0573 Lele-ChrLele44 4447833 4459322 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0777 41 17626307 17636871 Lele44g0573 44 4447833 4459322 hybridization
Lele42g0768 42 20702924 20714452 Lele44g0573 44 4447833 4459322 hybridization