Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0538 ATGCCACAGCCACCAGAGACAAATGGTGAAGATAAGATAAATTTTAAGTGGGGTAACAAGAGGGGAGTTGGTCGGAATAATAAAGACGTCCGGTTATACGAGTCATTCACTTATGAGGGCGTGGAGTACTTTCTATATGATTGTGTTTACTTTTACAGAACAGGTGATTTTGAAACATCTATTGGTAAGCTTGTGACGATATTTGAGACTCCAAAGCATGAAAAGAAGGTGAGAGTTATCTGGTTTTTCCGTCCTATTGACATTCGCAGCTCCTTAGGAGATTATCGGCCACATTGGAAAGAGTTATTTCTAGCATGTGGTGAAGGCAAAGGTGTTTCAAATGTCAATTCTTTGGAAAGTATAATTGGAAAATGCAATGTTGTCTGCACTGCAAAGGATGAAAGAAATCTTGAGCCATCAGAAGCAGAGCTAAAGATGGCAGACTACTTTTTTAAGCATTGCTTTAATGTTGGACGCCTTTCAATAATGAATAAATTTGCAGTTGTTATTGGTGGAGTCAAAGTGGAGGAAATCTTCAACAGGAAGAAGGTTCAAAAGATCAGTAATCCGGTATCAAAGCATGGACTTGTGATTAAGAAGAGGACTGATCCTTCTGGTATGCCTCGCCTCCAATTTGATGGTAAAGCTCAAGTGAAATCTGACATTGCCATGCAAAAGAACAAATTATTAAATTCTTTTCCATACAAAAAGAGGAAGATGCTAGACCAGACGCATTCCAGTAGTCAAAGCAAAGAATCAACTATGGAAGAAGATTTTGACAAGAGAAGTAAGCTGTTTCATGAAGGTGCTCCTGAGCTTGGATTGAGCAAAGTAGTAAAACATTGCGGAGAATTTATGGAGGTCATTGGAAGGCCAGGCAATGTATGTCTTGAAAAATTCATTATGCCTTGGGAAGAAAAACTAAGGGAAGCTCAAGAGTCAGGCTGCCTGATTTTACTGAATAATCTTGATCCATCCTGTACATCATCTGAAGTAGAGGATCTCATTTGGCATACCCTCAATGAGAGCGTTTACGCAAAGATGATAGATTGGAACCCTACTCTCAAACCACATTATGGTAGAGCATTTGTTGTCTTCAAGACAAAAGATGTTGCTGAATCTGCCTTATCTCAGTTGAATAAGAGATGCCTTGTTCTTGGAGATGGAAGGGTTGTCAGTGCCACAAAAGGAAGGGTGAGAGAAACCGGTGAACAAACTAACTTCCCAGGCCATGTGGTCATGAACAGATTTGAGTTTCATAAGCAAACTGAGGAGATGAGAAATGCAGTATCAACATCACATTGTGCACAACCCAATACGGTTGAGTATAGAATGGCCATTGATTGGCTTGAACAACAGCACAAATCGAATGCATGGTGGGATGTATTACATCAGGCACAGAAGGAGGAGATACATGATGTTATGAGCAGACTCACAATGAAATGCAATATTTGA 1455 0.3986 MPQPPETNGEDKINFKWGNKRGVGRNNKDVRLYESFTYEGVEYFLYDCVYFYRTGDFETSIGKLVTIFETPKHEKKVRVIWFFRPIDIRSSLGDYRPHWKELFLACGEGKGVSNVNSLESIIGKCNVVCTAKDERNLEPSEAELKMADYFFKHCFNVGRLSIMNKFAVVIGGVKVEEIFNRKKVQKISNPVSKHGLVIKKRTDPSGMPRLQFDGKAQVKSDIAMQKNKLLNSFPYKKRKMLDQTHSSSQSKESTMEEDFDKRSKLFHEGAPELGLSKVVKHCGEFMEVIGRPGNVCLEKFIMPWEEKLREAQESGCLILLNNLDPSCTSSEVEDLIWHTLNESVYAKMIDWNPTLKPHYGRAFVVFKTKDVAESALSQLNKRCLVLGDGRVVSATKGRVRETGEQTNFPGHVVMNRFEFHKQTEEMRNAVSTSHCAQPNTVEYRMAIDWLEQQHKSNAWWDVLHQAQKEEIHDVMSRLTMKCNI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0538 484 Gene3D - 10 165 IPR043151 -
Lele44g0538 484 ProSiteProfiles BAH domain profile. 41 166 IPR001025 GO:0003682
Lele44g0538 484 Pfam BAH domain 47 136 IPR001025 GO:0003682
Lele44g0538 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 383 IPR000504 GO:0003723
Lele44g0538 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 399 IPR000504 GO:0003723
Lele44g0538 484 SUPERFAMILY RNA-binding domain, RBD 310 402 IPR035979 GO:0003676
Lele44g0538 484 PANTHER PROTEIN ANTI-SILENCING 1 4 265 - -
Lele44g0538 484 FunFam Bromo-adjacent homology (BAH) domain-containing protein 11 162 - -
Lele44g0538 484 Gene3D - 303 398 IPR012677 -
Lele44g0538 484 CDD RRM_SF 318 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0538 Lele-ChrLele44 4201146 4207098 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0807 42 20968286 20981595 Lele44g0538 44 4201146 4207098 hybridization