Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0523 ATGTCTTCGGAGAATCATCAACCGGACGATATCGCCATTGAGCTCAACTTCAACGACACCGAGCTCACCCTGGGCCTTCCCGGCTCTAAAACAGGTTCAAAACGTGGATTCTCCCACACAGCCACCAACAATAATGGCCATGCCTCAGCTACATCTTCTAAATCTCCCCCACAAAAGGCACAGATGGTGGGGTGGCCGCCGGTGAGGGCGAGCAGAAAGAGCGTGATGAAGAAATGCAAGTACGTGAAGGTAGCAGTGGACGGAGCTCCATATCTCAGAAAAGTAGATCTTGATATGTATCAGAGTTATGAGGAACTCCTAAGCTCCTTAGAAACCATGTTCAGCTGCTTAACCATCCTTACAGGCAATGATTTGAATCAGAAAGAGAATGGTGGAAAGAATAATGGAAGCGAATACATACCAACCTATGAGGACAAAGATGGTGACTGGATGATGGTCGGAGATGTCCCCTGGAACATGTTTGTTGAATCCTGCAAGAGAATACGGTTGATGATGAGCTCAGAGGCCACTGCTGGGTTAGGTGCGAGAAGAGGTTCAAAGTGA 564 0.4787 MSSENHQPDDIAIELNFNDTELTLGLPGSKTGSKRGFSHTATNNNGHASATSSKSPPQKAQMVGWPPVRASRKSVMKKCKYVKVAVDGAPYLRKVDLDMYQSYEELLSSLETMFSCLTILTGNDLNQKENGGKNNGSEYIPTYEDKDGDWMMVGDVPWNMFVESCKRIRLMMSSEATAGLGARRGSK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0523 187 Pfam AUX/IAA family 32 177 IPR033389 -
Lele44g0523 187 ProSiteProfiles PB1 domain profile. 79 177 IPR000270 GO:0005515
Lele44g0523 187 MobiDBLite consensus disorder prediction 24 59 - -
Lele44g0523 187 MobiDBLite consensus disorder prediction 24 65 - -
Lele44g0523 187 Gene3D - 73 183 - -
Lele44g0523 187 FunFam Auxin-responsive protein 74 184 - -
Lele44g0523 187 SUPERFAMILY CAD & PB1 domains 71 171 - -
Lele44g0523 187 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 177 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0523 Lele-ChrLele44 4065108 4065976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0523 83 176 B3 DNA Binding Superfamily AT3G61830 34.043 3.08e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele44g0523 AUX_IAA 2e-49 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0832 41 18034973 18035780 Lele44g0523 44 4065108 4065976 hybridization
Lele42g0820 42 21119702 21120558 Lele44g0523 44 4065108 4065976 hybridization