Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0522 ATGGAAAAAGATGGGGGTTTGGGACTTGAGATAACGGAGCTGAGGTTGGGACTCCCTGGTGGGAGGGAGAAGAAGAATGAGAAGAAGAGGCTGTTCTCGGAGATTGATGATGATCATCATGAGGAGGATGGCGATGGCGGAGAGGATCAGAACAGCTCGTCGGAGGGAGAGCGGAAAGTGGTGGTGGGGTGGCCGCCGGTGTGCTCGTACAGGAGGAAGAATAGCGTGATGAACAATGAAGGGTCAAAAATGTACGTGAAAGTGAGCATGGATGGAGCTCCATTCTTGCGCAAAATCGACTTGCAAAAGCTTAAGGCTTACTCTGAACTCGCTTTCGCCTTGGAAAATCTCTTTGGTTGCTATGGAATCAAGGAGGGGTTGAAGAATGGAGACAAAAGCGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTCGTTGGCGATGTCCCTTGGGAGATGTTTATGGAGTCATGCAAGAGGTTGAGGATAATGAAGAAATCAGAGGCAAAGGGATTTGGTGTGACACCAAAAGGGTCTCTAGAGGGATTTAATATTATAGAAGGCATCACCAACTGA 585 0.4821 MEKDGGLGLEITELRLGLPGGREKKNEKKRLFSEIDDDHHEEDGDGGEDQNSSSEGERKVVVGWPPVCSYRRKNSVMNNEGSKMYVKVSMDGAPFLRKIDLQKLKAYSELAFALENLFGCYGIKEGLKNGDKSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKKSEAKGFGVTPKGSLEGFNIIEGITN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0522 194 Gene3D - 77 180 - -
Lele44g0522 194 MobiDBLite consensus disorder prediction 18 58 - -
Lele44g0522 194 MobiDBLite consensus disorder prediction 18 37 - -
Lele44g0522 194 SUPERFAMILY CAD & PB1 domains 74 168 - -
Lele44g0522 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 173 IPR003311 GO:0005634|GO:0006355
Lele44g0522 194 ProSiteProfiles PB1 domain profile. 83 169 IPR000270 GO:0005515
Lele44g0522 194 FunFam Auxin-responsive protein 78 179 - -
Lele44g0522 194 Pfam AUX/IAA family 45 175 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0522 Lele-ChrLele44 4052958 4057328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0522 79 183 B3 DNA Binding Superfamily AT4G23980 39.048 6.38e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele44g0522 AUX_IAA 5.8e-45 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g0420 37 3476957 3478483 Lele44g0522 44 4052958 4057328 CCT
Lele41g0833 41 18044366 18047882 Lele44g0522 44 4052958 4057328 hybridization
Lele42g0821 42 21129481 21133391 Lele44g0522 44 4052958 4057328 hybridization