Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0521 ATGGATGTTAACTCTCCAGAACTGAATATAAACTCCCAAACCGACAGATATCCTTTGCTGATGGAGCAGTCTGAAAGCCACCATCAGCACATGATTGACATCACAAGGAATGGTGATGCTTTATCCAACTCTTCGCATGTTTCTCAACTTCCTGAAATACATTTAACACAGAATGAAGATCAACAGTCCAGTGGTACACGAGACCCTACTCATCAAACATATTCCTCTTCTAGATTAAACTCTCGAAATTCTTCATCAACTAGAGGTGAGGGGTATCGAAGAAGGAATCCATTAAATTCTGTACTATGGATTTCAGTTGAGCTTGTTGTCACTGTGGGTCAGATTATAGCATCTATTGTTGTCTTGTCATTGTCGAGGAACGAAAATCCACAAGCCCCATTATTTGCATGGGTTGTGGGTTATACATCTGGTTGTGTTGCCACACTTCCTATTCTATATTGGCGGTATCATAGCCATAATCAAAGTACTGAACAAGATACTTCTCAACAACCTCAAGGACCTTCTGGAAGCGATCATCCATTACCTACCTCATACACTGCTATCTCCAATGCTCATGTTTCAGATGAGGAGAATAGTCATGTGACAGCATCAGCTGCCAGAAACAGTAGGATTCCTGGAGCCTTTTTTTCTAGGCTTAATGGATTGGTAGATCATTTCAAAATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTGGGCAACGTATGGATCTTTGGAGGCCACACTTCTCCTTCGGATGCTCCAAAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGCATTGGATATGCTATGCCATTTATCCTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTGTCCTCGGCATTCGGGAGGATTTTTCTCAAACTAGAGGTGCAACAGTAGAGTGTATCAATGCCCTGCCAATTTACAAGTTCAAATTGAAGAAAACTGAAAATAGTGACAATCAGGATGTCAACACAGCTATAGATGAAGGTGGCATCTTTGCTACGGGGACAGAAAAGGAACGGGCCATATCTGGAGAAGATGCTGTCTGTTGCATTTGCTTGGCGAAATATGCAGACAATGATGATCTTAAGGAGTTACCATGTCTTCATTTCTTTCACGTAGTGTGTGTTGACAAATGGTTGAAGATAAACGCATCATGTCCTCTCTGTAAAAGTGATGTTGGCGTGATTAGTGGAGAGTCTCCTTCAGCTGGGGACTCCGGTTAG 1254 0.4155 MDVNSPELNINSQTDRYPLLMEQSESHHQHMIDITRNGDALSNSSHVSQLPEIHLTQNEDQQSSGTRDPTHQTYSSSRLNSRNSSSTRGEGYRRRNPLNSVLWISVELVVTVGQIIASIVVLSLSRNENPQAPLFAWVVGYTSGCVATLPILYWRYHSHNQSTEQDTSQQPQGPSGSDHPLPTSYTAISNAHVSDEENSHVTASAARNSRIPGAFFSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVECINALPIYKFKLKKTENSDNQDVNTAIDEGGIFATGTEKERAISGEDAVCCICLAKYADNDDLKELPCLHFFHVVCVDKWLKINASCPLCKSDVGVISGESPSAGDSG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0521 417 SMART ring_2 359 399 IPR001841 -
Lele44g0521 417 MobiDBLite consensus disorder prediction 56 93 - -
Lele44g0521 417 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 403 - -
Lele44g0521 417 CDD RING-H2_RNF111_like 358 402 - -
Lele44g0521 417 SMART ringv_2 358 400 IPR011016 GO:0008270
Lele44g0521 417 SUPERFAMILY RING/U-box 352 406 - -
Lele44g0521 417 MobiDBLite consensus disorder prediction 162 181 - -
Lele44g0521 417 Pfam Ring finger domain 359 400 IPR001841 -
Lele44g0521 417 ProSiteProfiles Zinc finger RING-type profile. 359 400 IPR001841 -
Lele44g0521 417 FunFam E3 ubiquitin-protein ligase 342 408 - -
Lele44g0521 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 405 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0521 Lele-ChrLele44 4035482 4038424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0521 1 410 C3H Transcription Factor Family AT1G80400 57.108 8.18e-165 467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0835 41 18066920 18070305 Lele44g0521 44 4035482 4038424 hybridization
Lele42g0822 42 21145757 21148710 Lele44g0521 44 4035482 4038424 hybridization