Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0506 ATGCTTCAGATGGACCCACATGGTCCATCCAACGGAATTGAATCTGTATTGAAGCAAGATAATTGGATTTCTTCGGAGGTGGATACAGAGGTTAGGGAAGTGTTGGTGATCTGGAATTGGCACCAGAGTTTAATTGTGGCTTTATTGCTTGGAGTTGTGGTTTGTTTAATGGATGATGCCAAGGATGATGCAAGATCCCCTATTATGTATGGTGATAAAATCCATCAAGGTCGTGGCTATCTGAATGATCAAAAACATTCGGTTAAGAGTTCTCCATATTCTCAGCCCGTTACAAATGAGTATTTGGAAGATAATAATGATGATGATGAGAATGGAGAAGATGTGGAACTTTTAGTGGATGAGGAATATGATGATGCTGATCAGAGTAATAGTATTTATCTGAAAAATGATGTTGGTGCGAATAATTACGAGGAAGATGATGAGGGTGAAGGTGATGATGATGAAAATCATGGTAACAATGACAATAATGATGATGACGATGATACTGATGATGAAGATGATGGTGGTAAGAAGAAGAGTTATAAGAAGAGAGCTGAAGATGATTCAGAATGGCATCCCAAAAAGCGAAAGCTGAAAAGATTGATTTCAGCTTATGAAGTTGCCCCTCGTGTGCCAGCAGCAGCACCATCATCTGCAACTCACTCAGAACCAAAACCATATTTCGGTTCCAGGAATTCCCTTACTGACTGGACTGAACATGAGACATTTTTTCTTCTTGATGCTTGGGGGAACCGGTTTCTTCAACAAGGACGAAAAAGTCTTCGGTCTGAGCAATGGCAAGAAGTTGCAGAAGAAGTATCAGAAGTTTCTAAAATTGAAAGGACGGATGCTCAGTGTCGGAATCGTCTAGACACATTAAAGAAGAAATACAAAAAGGAGAAAACTAAATTAGCAGAAACTGGGGGCGGATCTAGCAAATGGGCGTATTTCAAAAGGATAGATAAGCTGTTGTCTTCCCCTCCACAGCAAGCTGGTCTCTCTTGTGGTTTAGACTCAGGAGAGTATGTTTTTATGAACCCTAGAGTTTATTTGAACCGTGCAAATGGGTTAGATGAGATGAGGGATAGTCCAGGGAATTCAGAATCCACTGGTGAAGATGAATATTTATTAGGGGGACTTCATCCAAAGAAAAGAAGGCATGGAAGAGGGGACAGGGATGAAACTTCCTACAGATTGCTGGCCGAATTGATTCAGAAATTCGGCGAGATATATGAGAAGATTGAAAATAGTGGAAGGCAGCAGATGGTGGAACTGGAACAGATGAGAATGGATTTCCATAGAGAATTGGAAACACAGAAGAGGCAGATATTAGAGAGATTGCAAGGTGAGATTGCAAAACTGGATCAGAGAGAGAATGAGGATAATGATGTTTCTGTGGAGAAGGATGAGTAA 1413 0.4062 MLQMDPHGPSNGIESVLKQDNWISSEVDTEVREVLVIWNWHQSLIVALLLGVVVCLMDDAKDDARSPIMYGDKIHQGRGYLNDQKHSVKSSPYSQPVTNEYLEDNNDDDENGEDVELLVDEEYDDADQSNSIYLKNDVGANNYEEDDEGEGDDDENHGNNDNNDDDDDTDDEDDGGKKKSYKKRAEDDSEWHPKKRKLKRLISAYEVAPRVPAAAPSSATHSEPKPYFGSRNSLTDWTEHETFFLLDAWGNRFLQQGRKSLRSEQWQEVAEEVSEVSKIERTDAQCRNRLDTLKKKYKKEKTKLAETGGGSSKWAYFKRIDKLLSSPPQQAGLSCGLDSGEYVFMNPRVYLNRANGLDEMRDSPGNSESTGEDEYLLGGLHPKKRRHGRGDRDETSYRLLAELIQKFGEIYEKIENSGRQQMVELEQMRMDFHRELETQKRQILERLQGEIAKLDQRENEDNDVSVEKDE 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0506 470 MobiDBLite consensus disorder prediction 83 101 - -
Lele44g0506 470 MobiDBLite consensus disorder prediction 83 195 - -
Lele44g0506 470 FunFam trihelix transcription factor ASIL2 237 299 - -
Lele44g0506 470 MobiDBLite consensus disorder prediction 173 195 - -
Lele44g0506 470 MobiDBLite consensus disorder prediction 377 392 - -
Lele44g0506 470 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 226 460 IPR044823 -
Lele44g0506 470 MobiDBLite consensus disorder prediction 102 127 - -
Lele44g0506 470 ProSiteProfiles Myb-like domain profile. 237 294 IPR001005 -
Lele44g0506 470 Coils Coil 422 464 - -
Lele44g0506 470 Gene3D - 237 299 - -
Lele44g0506 470 MobiDBLite consensus disorder prediction 143 172 - -
Lele44g0506 470 MobiDBLite consensus disorder prediction 358 392 - -
Lele44g0506 470 Pfam Myb/SANT-like DNA-binding domain 236 323 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0506 Lele-ChrLele44 3886607 3891634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0506 390 457 Trihelix Transcription Factor Family AT3G14180 44.118 7.92e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele44g0506 Myb_DNA-bind_4 1.3e-21 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0850 41 18199678 18200859 Lele44g0506 44 3886607 3891634 hybridization
Lele42g0840 42 21292608 21294182 Lele44g0506 44 3886607 3891634 hybridization